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---
id: cbmpy
version: 0.7.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_CBMPy/d745c949e17df9f62cd385543be9613de522d721/biosimulators.json
specificationsPatch:
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http://cbmpy.sourceforge.net/
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---
id: cbmpy
version: 0.7.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_CBMPy/bc67f88e3dd99e29a04825cf870b0f08ee3e3c92/biosimulators.json
specificationsPatch:
…
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Utrecht will look into providing access for our project team to their Jira instance (seems they can work with SurfConext)
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---
id: cbmpy
version: 0.7.25
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_CBMPy/d3509b46655beff5593497b5125c491a307df954/biosimulators.json
specificationsPatch:
…
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- [x] Algorithms have unique KiSAO ids
- [x] Parameters of an algorithm have unique KiSAO ids
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# Issue
SED-ML can currently not perform typical fbc simulations.
These would include things like
* optimization
* setting boundaries
* adding LP constraints
Typical simulation experiments ar…
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Hi!
I'm trying to build a template model using Trypanosoma cruzi. However, I'm gettin an error:
NITDB: connecting geneDB
INITDB: connecting notesDB
[('iIS312', 'iIS312.gbff', 'iIS312.xml')]
…
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The simulator containers built with BioSimulators-utils (AMICI, COPASI, GillesPy2, PySCeS and soon BoolNet, BioNetGen, CBMPy, COBRApy) will save status information when they are next rebuilt.
These…
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Hi Matthias
Great work getting this together, a few issues I've noticed with regard to your FVA results.
1. In the example e_coli_core FVA result files, the reaction identifiers don't match the …
bgoli updated
4 years ago