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Boutiques implementation in CBRAIN has the following bug with the handling of flags: for it will substitute "-a false" on the command line when flag "-a" is not active.
This bug fix is required for a…
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BET can run on 4D fMRI data by selecting option -F. If this option is selected, other ones, such as -B, -S, -R must become unwritable. Otherwise, the output will be seriously erroneous, and only one v…
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If CIVET is sent to 'recover' mode when its T1 input file has been cleared from the DP cache, it fails in a different way that CBRAIN can't detect right now, so the task is erroneously marked as `Comp…
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Some applications:
- need to be launched from a specific work directory in a container (add a string property for this).
- only accept absolute file paths (add a boolean property to File inputs and o…
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Hi,
I am beginning to look at building boutiques containers to wrap my docker pipelines. I have a few comments about the documentation, and places where I would like clarification. Thanks!
- htt…
gkiar updated
7 years ago
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The plugin installation rake task fails as follows:
```
rake cbrain:plugins:install:all
[...]
Errno::ENOENT: No such file or directory @ rb_sysopen - /home/glatard/code/cbrain/Bourreau/config/da…
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Lindsay said in https://github.com/aces/cbrain-plugins-neuro/issues/73
```
It would be nice to be able to download a file from a collection directly, as a one-step process, rather
than having to clic…
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We no longer SVN IDs, there is a single place in the code of
```
cbrain_task/niak_pipeline_fmri_preprocess/bourreau/niak_pipeline_fmri_preprocess.xml.erb
```
(line 32) where we invoke svn_id_pretty_…
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_From @vsoch on July 12, 2016 21:10_
I noticed in the spec that "docker-image" and "docker-index" are sort of hard coded. They aren't required so having them isn't a big deal, but there doesn't seem …