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Hi Dr. Jin,
Thank you for the very useful tool!
Recently, we found some problems when analyzing cell communication with cellchat. We would like to ask what is the minimum number of cells that can …
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I would like to calculate the aggregated cell-cell communication network between only a couple of source cell types and a couple of target cell types.
I'm using the following code:
##Calculate t…
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Hi,
I'm getting errors when trying to plot the chord diagram in "Inference and analysis of cell-cell communication":
par(mfrow=c(1,1))
netVisual_aggregate(cellchat, signaling = pathways.show, layo…
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Hi CL Team,
https://en.wikipedia.org/wiki/Satellite_glial_cell
PMID: 36351367
https://pubmed.ncbi.nlm.nih.gov/36351367/
> The adult dorsal root ganglion (DRG) harbors cell bodies of sensory …
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Hi, thank you for this work. How to quantize it to use int8? Any comments are appreciated.
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Hello!
Thank you so much for developing this incredibly useful tool! I merged two datasets with the same cell types to compare signaling from cell type 1 (het) to cell type 2 and cell type 1 (wt) t…
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I am working with 10x visium spatial transcriptomics data.
When reading the function documentation for computeCommunProb, I noticed that there are a few parameters that seem to affect whether distanc…
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To see what components still work, and which ones need to be replaced
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Dear developer,
Thank you for this powerful software to study cell-cell communication. I recently have an error when running the `netAnalysis_signalingRole_heatmap` function, it raised **"Error: elem…
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Hello, trying to visualize the communication between two celltypes in both directions (i.e. T Cell -> Macrophage and Macrophage -> T Cell). My code is:
```
sources = c(5,8) # T cell, Macrophage
…