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Hello, is there deconvolved data available anywhere? Thanks!
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Good day!
I am trying out this nice tool to analyze data generated using Visium. I have employed cell2location for cell-type deconvolution and have successfully prepared the data according to the t…
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Hi team,
In the Redeconve manual.ipynb, I noticed that you mentioned Redeconve can also be used for bulk RNA-seq deconvolution. Does this mean we can use scRNA as reference to deconvolute bulk RNA …
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Hi,
I am a fan of cell2location!
It was said that " Although the emerging SRT technologies, such as MERFISH, Slide-seq and Stereo-seq, had achieved cell-level or subcellular spatial resolution, so…
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Dear authors,
Hi, all! Thank you so much sharing great tool to community.
I happen to come across you used DLPFC 10x visium data on CytoCommunity as well but can't find any toy example how you con…
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I like the idea of pooling information across methods. Several deconvolution methods yield different interpretation of the results (Cell2location outputs expected cell numbers while destVI outputs lik…
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Dear,
Is it possible to use EPIC for cell type deconvolution using ATAC-seq datasets?
It gives the following error when I provide bulk ATAC-seq matrix (rows=peaks, columns=sample/subject) as inp…
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Hello,
I am trying to perform deconvolution on some spatial data. I have had success running `Giotto::runDWLSDeconv()` previosuly but now I am using a larger signature matrix and it appears that `q…
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Dear author,
Thanks fro providing such useful and convenient pakcage for stRNA analysis!
I wonder whether I can use the SpaCET for uncancerous tissues (eg. normal sample, liver cirrohosis, and adja…
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Dear MethylResolver team,
I want to apply cell-type deconvolution on some Illumina EPIC methylation data from whole blood. To run MethylResolver (with betaPrime=FALSE), I understand I need to use n…