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Dear professor sqjin,
I run ```netVisual_bubble``` and ```netVisual_chord_gene``` functions of cellchat to visualize cell communication, but got too many receptor/ligand interaction. I still woul…
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options(stringsAsFactors = FALSE)
> # Set the full human ligand-receptor interaction database
> CellChatDB.use # Using a subset of CellChatDB for cell-cell communication analysis
> CellChatDB…
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Hi! I'm new to CellChat (just installed recently), but I can't seem to make it work.
A bit of context:
I have an h5ad data object from 10x scRNA experiments (batch correction for multiple samples).…
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Hi,
I am using v2.1.2
I have encountered what appears to be an unresolved issue relating to #202. When using group.new = union(levels(cellchat1@idents), levels(cellchat2@idents)) in conjunction…
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Hi
Following your instructions, the setup and download of InterCellar worked fine.
Nevertheless, with my dataset or the example melanoma dataset generated by cellchat, there is an issue within t…
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I generated liana result from my single-cell dataset. However, I was unable to aggregate the CCC results if I included the cell chat output
The command used to generate liana result:
`liana_res …
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thank you so much for creating this tool
quick question regarding utilization of cell chat with spatial data:
https://htmlpreview.github.io/?https://github.com/sqjin/CellChat/blob/master/tutor…
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CellChat team,
I am trying to make a CellChatDB for chicken (_G. gallus_). The code is below, however when I run the `showDatabaseCategory()` function I get the following error:
```
Error: `idx`…
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Thank you for the continuous development of this great package.
I was running into the following error using CellChat V2.1.1:
# This command runs fine
cellchat
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Hi Sqjin, I tried to install CellChat by
devtools::install_github("sqjin/CellChat")
, however it gives an error:
Error in readRDS(nsInfoFilePath) : error reading from connection
Calls: ... nam…