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Hi all - I am getting the following error when I import my javabridge package:
```
No handlers could be found for logger "javabridge.locate"
Traceback (most recent call last):
File "", line 1,…
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Due to a power surge/outage during the SH-SY5Y run and the computer not plugged in properly to the UPS (uninterrupted power supply), the SQLite file is incomplete.
Since CellProfiler does not have…
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Since cellProfiler stable version still uses python2.7, I installed Cellprofiler and centrosome with pip2.
Some commits change add "," to "**kwargs" lines, leading to syntax errors.
Example:
Set.…
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CellProfiler, for now, only accepts images with pixel values between 0 and 1. We should normalize the images in the knime-bridge, rather than in KNIME itself. Therefore we can directly do it on the un…
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I am having issues regarding the execution of this script to get the tif images of my cif file. I installed the dependencies explained on the readme, and try to stitch the images from the cellprofiler…
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OSX, 10.15.7, example training set or my own data
open classifier, select LogisticRegression, press Train. This error results:
```
An error occurred in the program:
AttributeError: 'str' objec…
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I'm able to export a file list and run CellProfiler from JEX, but the only way to get it to finish is by closing JEX. The output data won't show up otherwise. Can you help me figure out why it's getti…
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I'm having trouble running `javabridge` on my MacOS Big Sur (M1) with Azul Zulu OpenJDK. `pip install` works correctly, though I have to set `CFLAGS` to make the `numpy` dependency compile in my virt…
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There was a new release of numpy (version 2.0) last month that I think is not compatible with python-javabridge. As far as I can tell, the only version requirement check in CPA for numpy is "numpy>=1.…
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**Describe the bug**
CellProfiler crushes when I try to switch positions of modules in a pipeline via drag-and-drop.
**To Reproduce**
Steps to reproduce the behavior:
1. Start CellProfiler
2. U…