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WayScience
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pyroptosis_signature_image_profiling
This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.
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Rerun cytotable merge
#36
MikeLippincott
closed
4 months ago
1
add doi badge
#35
MikeLippincott
closed
6 months ago
0
Rerun for cell site
#34
MikeLippincott
closed
3 months ago
1
Edit notebooks to process PBMC batches
#33
jenna-tomkinson
closed
1 year ago
1
edit ASC speck documentation
#32
jenna-tomkinson
closed
1 year ago
1
Update main environment to fix MeasureGranularity error
#31
jenna-tomkinson
opened
1 year ago
1
Extract image features from SHSY5Y runs
#30
jenna-tomkinson
closed
1 year ago
2
merge runs with new nb
#29
MikeLippincott
closed
1 year ago
5
Feature selection of half runs results in different features selected for the same cells across different treatments
#28
MikeLippincott
closed
1 year ago
2
Add plate 2 feature processing module
#27
jenna-tomkinson
closed
1 year ago
3
Hard Coded folder access
#26
MikeLippincott
opened
1 year ago
2
Power surge causing CellProfiler to stop mid-run
#25
jenna-tomkinson
opened
1 year ago
1
Add plate2 analysis
#24
jenna-tomkinson
closed
1 year ago
2
Add `.resolve()` to all absolute paths to avoid using symlinks
#23
jenna-tomkinson
closed
1 year ago
1
Add illumination correction module for Plate 2
#22
jenna-tomkinson
closed
1 year ago
2
cp_utils `run_cellprofiler` function repeats code
#21
jenna-tomkinson
closed
1 year ago
1
Add plate 2 download and max projection modules
#20
jenna-tomkinson
closed
1 year ago
2
move all plate 1 waves into one folder
#19
jenna-tomkinson
closed
1 year ago
1
Edit the Wave 1 module for Interstellar Project
#18
jenna-tomkinson
closed
1 year ago
2
edit READMEs, add figure, move envs into folder
#17
jenna-tomkinson
closed
1 year ago
0
Refactor, rerun, and edit all waves
#16
jenna-tomkinson
opened
1 year ago
1
Remove large sqlite files
#15
gwaybio
closed
1 year ago
4
Wave 3 Channel Compensation Results Error
#14
jenna-tomkinson
opened
1 year ago
2
Add Wave 3 Analysis Module
#13
jenna-tomkinson
closed
1 year ago
2
Rename repository to `pyroptosis-signature"
#12
jenna-tomkinson
closed
1 year ago
1
Add Wave 3 IC Module
#11
jenna-tomkinson
closed
1 year ago
2
add max projection module
#10
jenna-tomkinson
closed
1 year ago
0
Rerun wave1 analysis after correcting platemap
#9
gwaybio
closed
1 year ago
0
correct platemap and rerun extract features
#8
jenna-tomkinson
closed
1 year ago
0
add process image features module
#7
jenna-tomkinson
closed
1 year ago
0
UMAP analysis for Wave 1 Nucleus features
#6
gwaybio
opened
1 year ago
3
Quantifying translocated gasdermin across treatments, doses, and neighbors
#5
gwaybio
closed
1 year ago
0
add wave2 modules and perform ic
#4
jenna-tomkinson
closed
1 year ago
2
run cp analysis and extract single cells
#3
jenna-tomkinson
closed
1 year ago
3
Create first two modules and perform IC pipeline
#2
jenna-tomkinson
closed
1 year ago
1
Adding wave 1 data and performing IC
#1
jenna-tomkinson
closed
1 year ago
1