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Hi,
I saw you have new option to use spatial transcriptomics, how to use, do you have one example, what I need beside the h5ad object?
Thank you
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Hello.
I'm trying to install cellxgene_VIP on an Apple laptop running MacOS 11.6.1
I've gotten the entire install process to complete with a few tweaks of the `config.macOS.sh` script.
Howeve…
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Hi,
We are running a cellxgeneVIP instance on AWS, and I am having a couple issues when trying to generate volcano plots in VIP DEG and trying to generate density scatter plots in VIP Density Scatt…
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Hello,
Thank you for developing this beautiful software. Is there any way to combine cellxgene-gateway and cellxgene_VIP?
Best wishes,
Polina
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Hi,
I noticed that when obs include nan, VIP cannot recognize cells appropriately as in the image attached.
![messageImage_1637735322742](https://user-images.githubusercontent.com/19543497/1432…
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Hello,
Thank you for the amazing software. Is there any way to combine cellxgene_VIP and cellxgene-gateway?
Best regards,
Polina
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If we are using Seurat v4 and SeuratDisk to export h5ad file, it seems that cellxgene basic still works fine but cellxgene VIP came up as blank.
```
library(Seurat)
library(SeuratDisk)
SaveH5Seu…
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Hi, I want to download selected cells, not in the red circle? is there a way to do it in cellxgene VIP?
![image](https://user-images.githubusercontent.com/23288387/132061273-7eca22a6-6503-4789-bb…
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Hi,
I'm trying to use cellxgene VIP and unable to see any of the plugins. I've tried both with my dataset and a test dataset. The cluster pops up, but none of the plugins (or the pull-down bar for …
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Hi, thank you for developing a nice tool.
I noticed that gene names in VIP are often swapped.
For example, in the [example page](https://cellxgenevip-ms.bxgenomics.com/), AQP4 expression in the na…