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Novartis
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cellxgene-gateway
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Apache License 2.0
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installing on AWS linux (2 or 2023) - numpy/numba compatibility and use of deprecated imp library
#95
dllahr
opened
3 weeks ago
0
UnicodeDecodeError leads to Internal Server Error
#94
earsmcgee11
closed
3 weeks ago
0
Missing genes
#93
RemiDL
opened
3 months ago
2
Deploy using Gunicorn - DATA LOCATION MISSING
#92
aniseedDB
opened
5 months ago
2
Upgrade node version in GitHub actions
#91
alokito
opened
6 months ago
0
Bump flask from 2.2.2 to 2.2.5
#90
dependabot[bot]
closed
6 months ago
0
Bump werkzeug from 2.3.0 to 2.3.8
#89
dependabot[bot]
closed
6 months ago
2
Fix dockerfile installation problems
#88
nictru
closed
6 months ago
0
ImportError: cannot import name 'url_decode_stream' from 'werkzeug.urls'
#87
ahrweber
closed
6 months ago
2
Issue with Docker implementation
#86
streptomycin
closed
6 months ago
1
Optimizing Large Dataset Loading and Differential Expression Analysis in local hosted CellxGene VM
#85
chunhuicai
opened
12 months ago
0
Save gene sets without cell annotations
#84
george-hall-ucl
closed
6 months ago
1
gene set support
#83
alokito
closed
1 year ago
1
Add support for gene sets
#82
george-hall-ucl
closed
1 year ago
1
Gene-sets not loading from file
#81
george-hall-ucl
closed
1 year ago
7
79 add docker example
#80
alokito
closed
1 year ago
0
Customizations to the UI
#79
tkakar
closed
1 year ago
3
File crawler does not scale for deeply nested directories
#78
aeisenbarth
closed
1 year ago
1
Filter directories without h5ad files
#77
aeisenbarth
closed
1 year ago
2
Force refresh cellxgene instance for overwriting a file with same name
#76
Dane-Z
closed
10 months ago
2
Is it possible to specify different cellxgene arguments for different dataset?
#75
zeissmania
closed
1 year ago
2
#73 moved new annotation link to front
#74
alokito
closed
6 months ago
1
Suggestion: Put "new" annotation link at front of annotations list
#73
Dane-Z
closed
6 months ago
6
add basic prometheus metrics with prometheus_flask_exporter
#72
rbelnap
opened
2 years ago
2
Trouble connecting to cellxgene-gateway and cellxgene
#71
Dane-Z
closed
2 years ago
1
introduce create_subprocess method in subprocess_backend
#70
alokito
opened
2 years ago
0
68 read from subprocess
#69
alokito
closed
2 years ago
0
Cellxgene Gateway hangs when h5ad file has many annotations
#68
alokito
closed
2 years ago
1
Docker
#67
alokito
closed
2 years ago
1
Dockerise cellxgene-gateway
#66
romanhaa
closed
2 years ago
2
Re: Cache pruning time
#65
brianlamx
closed
2 years ago
3
Cannot install by any way
#64
LuciaWL001
closed
2 years ago
1
Error when running tests in build
#63
alokito
closed
6 months ago
1
Force reload of s3 file structure on every request
#62
arogozhnikov
closed
2 years ago
5
Empty annotation file on S3
#61
berguner
closed
6 months ago
3
#59 add refresh query param to force refresh of S3 cache
#60
alokito
closed
2 years ago
1
Force update list of files without restarting server?
#59
arogozhnikov
closed
2 years ago
6
Allow custom cellxgene config to be specified for cellxgene server processes
#58
alokito
closed
2 years ago
1
Deeply nested folders are not properly displayed in filecrawl
#57
alokito
closed
2 years ago
0
Is there a way to save an analysis state?
#56
Matthew1309
closed
2 years ago
1
incompatible numpy versions
#55
alokito
closed
2 years ago
8
The filename, directory name, or volume label syntax is incorrect.
#54
ghost
closed
2 years ago
2
cellxgene-gateway fails to start any server
#53
klkeys
closed
2 years ago
9
Integrating cellxgene-gateway and cellxgene_VIP
#52
PolinaPavlovich
closed
2 years ago
1
Enable listing nested subdirs
#51
alokito
closed
3 years ago
0
local nested subdirectories
#50
Jon-bioinfo
closed
3 years ago
3
Fix cache pruning
#49
alokito
closed
3 years ago
1
Error in prune process cache
#48
alokito
closed
2 years ago
0
Launching docker container for each dataset
#47
titansmc
opened
3 years ago
1
Nested s3
#46
alokito
closed
3 years ago
2
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