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Hello. I am very glad to know about this package.
I am working on a way to represent peptide coverage over a protein sequence (i. e. represent peptides identified by MS over the whole protein). I t…
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@jeet-vora @kmartinez834 Please review my draft instructions for creating the user dataset.
For now we are only going to extract the manually verified ("unambiguous") sites and c-mannosylation data…
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The names of these make it unclear which type of entity each is meant to refer to. Based on child terms of the latter, I'm guessing that it refers to the actual molecules and the former refers to the …
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```python
# up to two missed cleavage sites.
peptides = ("ILTERGYSFTTTAEREIVR",
"GYSFTTTAEREIVRDIK",
"EIVRDIKEK",
"DIKEK…
enryH updated
4 months ago
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right now we only have the background universe for when we are looking 4 sites up and down from the cleavage site. We need to make this more flexible to accommodate when we look farther out.
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### Setup
I am reporting a problem with Biopython 1.81, Python 3.8.17, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_impleme…
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His next claim is that it is very unlikely that there would be bats naturally living in the metropolitan distict of Wuhan, and in fact no bats were traded at the market at all.
Let us go one step f…
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Hello,
Right now we have 4 files for several species (human chicken cow pig dog), which was requested here #156 (with little explanation as to why we anted that).
1. annotations to canonica…
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Tracking updates of www.twitch.tv
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While the peptigate pipeline aims to predict small open reading frame peptides, cleavage product peptides, and nonribosomal-peptide synthetase peptides, so far we've had the most success with cleavage…