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I was hoping to use PyStruct for a BSD-licensed project, but when I try to run
```
from pystruct.learners import SubgradientSSVM
```
which apparently does not rely on `cvxopt`, I get
```
ImportErro…
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Hi, thanks so much for making this program it looks really promising. I had a couple of issues I was hoping to get help with.
My specifications are:
OS is ubuntu 20.04, linux 5.4
conda version 23…
ab4cp updated
11 months ago
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# Purpose
In an effort to improve cross-ecosystem compatibility, it would be nice to make table-like data structures more interoperable. My view of the ecosystem is quite narrow - I'm really only a…
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**Submitting author:** @wsmets (Wenke Smets)
**Repository:** https://github.com/LebeerLab/tidytacos
**Branch with paper.md** (empty if default branch): master
**Version:** v0.3.0
**Editor:** @diazrena…
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Dear Greg - thanks for your continued work on this and for this follow up paper with updated pipeline. I'm the lead author of [Hermida et al. Nat Commun 2022](https://www.nature.com/articles/s41467-02…
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![upsetr](https://github.com/user-attachments/assets/d279210e-4f0d-47ed-9be5-56a190de255d)
Sorry for this question, but could someone help me understand this graph?
P.S.: IDs with "_REF" are ref…
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Trying to execute the 16s workflow via docker. From the documentation it sounded like only `usearch` would be missing due to its licensing issues, however it seems that `vsearch` is also excluded fro…
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**Describe the bug**
After selection of files to run the log screen only shows "Waiting for logs" and at bottom it shows "Initializing IMNGS2-Core environment: Checking docker image tag"
**Screens…
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Hi there,
I am seeing very low mapping rates (~10-15%) for my whole genome sequencing data using Kraken 2. Samples are gut microbiome samples from patients with heart disease, sequenced on Illumina…
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