DerrickWood kraken2 issues

DerrickWood / kraken2

The second version of the Kraken taxonomic sequence classification system

MIT License

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issues

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Terminal disappears automatically when runs classification command

#845 pratibha-kadam opened 1 day ago
2
Kraken2 does not add to the custom library *every* downloaded sequence

#844 LeandroD94 closed 4 days ago
6
Interleaved Fastq input

#843 WEClarke opened 1 week ago
0
discrepancy between Kraken results and BLAST hits

#842 kuldeepmore10 opened 1 week ago
4
Low minimizer count in prebuilt NT Database leading to unclassified reads

#841 remondulos opened 2 weeks ago
0
Download speed of databases

#840 bheimbu opened 2 weeks ago
0
Ewquest to provide Kraken2 index for the FDA-ARGOS

#839 Rohit-Satyam opened 2 weeks ago
0
Kraken2 Databases

#838 hamzaaitabbou96 opened 3 weeks ago
0
Issue with ITS analysis

#837 christopherwilliamlee opened 1 month ago
0
How to merge Refseq databases？

#836 smoothyly opened 1 month ago
2
Assembly unclassified using Kraken2 but can be identified running Blastn

#835 mbacino opened 1 month ago
0
Number of reads in .kraken2.output.txt, _1.fq and _unclassfied_1.fq inconsistent with reads in input fastq file

#834 MAlinkous closed 1 month ago
3
Kraken2 custom build skips high identity added fastas

#833 annabel-dekker opened 1 month ago
0
build_db: error opening taxonomy//nodes.dmp: No such file or directory

#832 B1991ing opened 1 month ago
1
Using kraken2 to extract/group the read/contigs based on their corresponding taxa (some kind of binning).

#831 kaydadaemon opened 1 month ago
0
When I use Kraken2 analysis, I report a bus error.

#830 boyanboyue opened 1 month ago
0
Is it possible to specify multiple databases for classification？

#829 smoothyly opened 1 month ago
0
Can we choose to load the database just once and share the memory between runs?

#828 d-jch opened 1 month ago
1
Trying to run the nucleotide nt Database across multiple nodes on my University's hpc cluster

#827 JDMirza opened 2 months ago
2
Lack of taxo.k2d in database

#826 Yeahji9721 opened 2 months ago
9
Sample Report Output Format question

#825 Manso002 opened 2 months ago
0
Kraken2 build fails

#824 sachinharle opened 2 months ago
4
Use limited RAM to run a kraken2 analyse with nt databse.

#823 boyanboyue closed 1 month ago
3
Oral Microbiome (eHOMD) kraken-bracken database

#822 fconstancias opened 2 months ago
1
Only eukaryote reads are being classified with nr database

#821 timghaly opened 2 months ago
4
download_taxonomy.sh: line 27: rsync: command not found

#820 Tsingsjeen opened 2 months ago
2
What is the size of 'bacteria' library?

#819 Leoaterra opened 2 months ago
0
NCBI has changed FASTA downloads

#818 ramongallego opened 2 months ago
0
xargs: cat: terminated by signal 13

#817 namdeka opened 2 months ago
4
Beginner in Kraken2

#816 Juanloar181 closed 2 months ago
0
Unexpected FTP path

#815 Bahnie opened 3 months ago
2
report-minimizer-data option

#814 bawee opened 3 months ago
0
Difference between standard and minikraken databases

#813 minchanceking opened 3 months ago
0
could k2mask be used for fastq file ?

#812 feihongloveworld opened 3 months ago
2
Same process, same DB, different result

#811 minchanceking opened 3 months ago
0
error downlading bacteria library

#810 B1991ing opened 3 months ago
4
Error reading in hash table

#809 Marta2906 opened 3 months ago
0
progress bar should be shown when running kraken-build

#808 feihongloveworld opened 3 months ago
0
Kraken2 is not creating a report file

#807 elliewilson9 opened 3 months ago
1
kraken2 assigning exactly the same taxonomy at low magnitudes to very different samples

#806 ctuni opened 4 months ago
1
DB for Helminths and Worms

#805 msubirana opened 4 months ago
0
Humann3

#804 PaolaDiGianvito opened 4 months ago
0
Kraken2-download taxonomy

#803 PaolaDiGianvito opened 4 months ago
2
When building the database, the taxid in the hash table was not checked. Only the existence of a minimizer key was queried. If the same minimizer exists in different taxid sequences, then the compare_and_set function should be executed.

#802 eric9n opened 4 months ago
0
Kraken2 not outputting species of interest

#801 DuttaAnik opened 4 months ago
0
How to change the default kmer length and minimizer length?

#800 alisonytlam opened 4 months ago
0
The taxon id was classified as 1

#799 ala98412 opened 4 months ago
1
Question: Extracting the k-mer tables in the LCA mapping

#798 wyanren opened 4 months ago
0
Still getting issue with rsync

#797 DCossey opened 4 months ago
7
Missing rank codes in reports

#796 jkimsis opened 5 months ago
0