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DerrickWood
/
kraken2
The second version of the Kraken taxonomic sequence classification system
MIT License
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Still getting issue with rsync
#797
DCossey
opened
5 months ago
7
Missing rank codes in reports
#796
jkimsis
opened
5 months ago
0
error when downloading the kraken2 nt database
#795
B1991ing
opened
5 months ago
4
Error in building 'nt' database
#794
manas12jmp
opened
5 months ago
1
mmscanner NextMinimizer method minimum calculation
#793
eric9n
opened
5 months ago
3
Question: Matching process
#792
tramelliwe
opened
5 months ago
1
Filtering Alignment Results for Fungi in PlusPF Database
#791
anzhi525
opened
5 months ago
1
Istallation error!
#790
Sasas-Lss
opened
5 months ago
2
paired-end data: only half reads classified
#789
nicolo-tellini
closed
4 weeks ago
4
kraken2 databases from AWS
#788
nbat64
opened
5 months ago
1
What is the difference between paired reads or single reads with kraken2 annotation
#787
timeresistance1996
closed
3 months ago
2
problem with building RDP special database for kraken2
#786
mars188
closed
5 months ago
2
kraken2 with plusPFP and plant sample
#785
vebaev
opened
6 months ago
7
Metagenomic software solving similar problems as krakenUniq
#784
pfeiferd
closed
5 months ago
0
add more deps to makefile
#783
jchorl
opened
6 months ago
0
human herpesvirus 2 missing from database
#782
rgiannico
closed
6 months ago
1
reads classified to both bacteria and mice genomes
#781
luzhang321
opened
7 months ago
3
Sequence headers duplicated in output
#780
zoey-rw
opened
7 months ago
1
Headers of paired-end files are truncated by kraken2
#779
jannikseidelQBiC
opened
7 months ago
1
Questions regarding deciding kmer size and minimizer size in Kraken2
#778
humbleflowers
opened
7 months ago
1
Masking low-complexity regions of downloaded library...
#777
Duyh814
closed
6 months ago
6
unexpected FTP path while building kraken2 standard database
#776
yashvagal
opened
7 months ago
4
problem with downloading databases
#775
AlexandreThibodeauUdM
opened
7 months ago
11
Using GreenGenes2 as Kraken2 custom DB
#774
VoronDM
opened
7 months ago
1
kraken crashing when running in a loop
#773
AlexandreThibodeauUdM
closed
7 months ago
5
Given threads are not getting utilized by kraken2
#772
SelfShubham
opened
8 months ago
1
Building standard database fails with "xargs: cat: terminated by signal 13"
#771
RicardoFong
opened
8 months ago
1
16S databases or full database?
#770
AlexandreThibodeauUdM
opened
8 months ago
3
Perfect k-mer matches on different species
#769
bartns
opened
8 months ago
1
Kraken2 seems to classify reads from read pairs separately
#768
SimonHegele
opened
8 months ago
1
Run kraken with multiple database
#767
DuttaAnik
opened
8 months ago
1
How does Kraken2 handle ambiguities
#766
Simon602
closed
6 months ago
3
Classification Notation for 150gb Database
#765
charlesb107
opened
8 months ago
1
nt Database question
#764
1023011930
closed
8 months ago
2
Getting Klebsiella all the time
#763
alanxelena
closed
2 months ago
3
Why does Kraken assign a read to NCBI tax ID 1 rather than 'unclassified'.
#762
CatInTheLab
closed
8 months ago
1
Does Kraken2 deal with chimeras
#761
alanxelena
opened
9 months ago
1
Make_kreport.py breaks if all reads unclassified
#760
mattheatley
closed
9 months ago
0
kraken2 2.1.3 empty taxonomic level field in k2report
#759
karlkashofer
opened
9 months ago
5
Some species missed in download database
#758
boyanboyue
closed
8 months ago
4
kmer classification against multiple separate DBs vs single DB
#757
ramiroricardo
closed
9 months ago
2
Cannot build kraken2 standard db, NCBI files not found
#756
Ge0rges
closed
6 months ago
3
CMake build error "Cannot specify link libraries for target "dustmasker" which is not built by this project"
#755
bioscienceresearch
opened
10 months ago
0
add gzip support for scan_fasta_file.pl
#754
pmenzel
opened
10 months ago
0
There is an error running "kraken2-build --download-taxonomy --db $DBNAME --threads 24".
#753
KeyLllll
opened
10 months ago
7
Does including nucleotide sequences in custom database increase the mapping power significantly?
#752
nataliaglazman
opened
10 months ago
1
standard protein database, viral seqeunces
#751
amanzanom
closed
6 months ago
1
./install_kraken2.sh: No such file or directory
#750
hollie9
closed
6 months ago
1
how many genomes have been included in kraken2 database
#749
ZhangDengwei
closed
6 months ago
1
All my reads are unclassified
#748
thek71
opened
10 months ago
2
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