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DerrickWood
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kraken2
The second version of the Kraken taxonomic sequence classification system
MIT License
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how many genomes have been included in kraken2 database
#749
ZhangDengwei
closed
6 months ago
1
All my reads are unclassified
#748
thek71
opened
11 months ago
2
Segmentation fault when trying to run Kraken2 on MacOS M2 Pro
#747
RicardoRH96
opened
11 months ago
0
Kraken-build
#746
drs357
closed
11 months ago
1
Fix issue with Silva having domain and superkingdom taxonomic ranks both converted to superkingdom (D) in Kraken
#745
Thomas-Bcp
opened
11 months ago
0
symbolic links for library folders
#744
amanzanom
opened
11 months ago
0
Trouble Adding Organism Genome to Kraken2 Custom Database
#743
duduzba
closed
6 months ago
1
Kraken2-build hanging with --add-to-library
#742
joshielevy
closed
11 months ago
1
"Numerical result out of range" error when running kraken2-build
#741
TakacsBertalan
opened
11 months ago
0
Add the nt database that has already been uploaded to the cluster for other applications
#740
william-amory
opened
11 months ago
0
silva database: more superkingdoms than domains in SILVA
#739
nggvs
opened
11 months ago
1
full taxa naming for kraken output
#738
mmcoff
opened
12 months ago
1
An easy way to get a hierarchical mapping between different taxonomic level
#737
Chengyao-Peng
opened
1 year ago
0
RDP no longer available
#736
douglasgscofield
opened
1 year ago
2
Issue with --download-library nt
#735
abdo3a
opened
1 year ago
9
Issue installing on MacBook Air M1
#734
peflanag
opened
1 year ago
1
Kraken2 Bacteria database missing certain taxa
#733
CompBioML
closed
1 year ago
2
Error in the "kmer_distrib" files in PlusPFP
#732
YingyuanBrewmaster
opened
1 year ago
0
Taxa names in k2report do not match reference database (NCBI January update)
#731
polinalen
opened
1 year ago
0
Kraken Database
#730
javad30
opened
1 year ago
3
kraken2 on large database
#729
fgvieira
opened
1 year ago
4
Classification failed without error information
#728
Chengyao-Peng
opened
1 year ago
8
Could not build the fungi database
#727
huang1997yu
closed
11 months ago
3
Could not build the fungi database
#726
vmevada102
opened
1 year ago
1
protocol results can not be reproduced
#725
shishanfu
opened
1 year ago
1
add option `--use-http` to kraken-build for downloading taxonomy and genomes from ftp.ncbi.nlm.nih.gov
#724
pmenzel
opened
1 year ago
1
Is it possible to get the full taxonomy for each taxid number of classified sequences?
#723
B-1991-ing
opened
1 year ago
3
'No preliminary seqid/taxid mapping files found, aborting.' error
#722
Qwyeen
opened
1 year ago
0
Database formatting error
#721
MForgia
opened
1 year ago
0
How will redundant or closely related sequences in a database affect kraken?
#720
jessicalumian
opened
1 year ago
3
Can the database be loaded into memory once to handle multiple paired reads files?
#719
maruiqi0710
opened
1 year ago
12
Check existence output folder prior to running kraken2
#718
TheOafidian
opened
1 year ago
0
Kraken2 basic installation is broken
#717
xapple
opened
1 year ago
2
rsync error and FTP workaround does not work
#716
Titch123
opened
1 year ago
3
After successful installation of kraken2 and database (both standard & custom), kraken2 is unable to recognise one database file i.e. toxo.k2d, while building the database we are getting error message, "database does not contain necessary file taxo.k2d" how to resolve this query?
#715
jyo-12345
opened
1 year ago
1
same error
#714
jsalas0798
opened
1 year ago
0
accession numbers unmapped
#713
fujch7
opened
1 year ago
1
Potential misclassification in several cases on a real patient file on read level
#712
pfeiferd
opened
1 year ago
8
mmap() flags wrong?
#711
sjaenick
opened
1 year ago
0
best parameters to work with ONT reads
#710
AzizHN
opened
1 year ago
1
No k2mask in path
#709
aebordoy
closed
1 year ago
2
unmapped sequences during the first step of building the database
#708
AzizHN
opened
1 year ago
1
Kraken causes potential mismatch on k-mer Level
#707
pfeiferd
closed
1 year ago
8
kraken2-build --build (self-defined) how much time???
#706
GaoXY99
opened
1 year ago
2
Improve resilience of rsync of library data
#705
josefdlange
closed
2 weeks ago
1
Empty masked library files
#704
tuttigiuperterraa
opened
1 year ago
2
rsync error
#703
tala-kiyani
opened
1 year ago
0
Kraken2 very slow in the WSL
#702
chen1i6c04
opened
1 year ago
0
/opt/kraken2/classify: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /opt/kraken2/classify)
#701
spiceeeheu
closed
1 year ago
1
Building standard database
#700
Matt-Schmitz
opened
1 year ago
0
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