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DerrickWood
/
kraken2
The second version of the Kraken taxonomic sequence classification system
MIT License
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/opt/kraken2/classify: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /opt/kraken2/classify)
#701
spiceeeheu
closed
1 year ago
1
Building standard database
#700
Matt-Schmitz
opened
1 year ago
0
Updating custom bacterial kraken2 database
#699
raeshrode
opened
1 year ago
1
fixed library & taxonomy download functions and added multiprocessing to speed up downloads
#698
eladc
opened
1 year ago
0
Fix a couple of issues when downloading files
#697
ch4rr0
closed
1 year ago
1
K-mer counting implementation
#696
AzizHN
opened
1 year ago
0
build a very small custom database
#695
nashanghenzan
opened
1 year ago
0
kraken2-build doesn't work when hash table is too large (v 2.1.2)
#694
ericproffitt
closed
1 year ago
1
Kraken2.1.2 database build stuck
#693
xhu556
opened
1 year ago
2
Loading database information...Killed
#692
nashanghenzan
closed
1 year ago
1
A method to solve kraken2-build download error
#691
aStudyingTurtle
opened
1 year ago
7
failed to build db
#690
nashanghenzan
closed
1 year ago
5
Python wrapper for calling kraken2 binaries
#689
ch4rr0
closed
1 year ago
0
Empty custom database
#688
Gepiro
opened
1 year ago
2
Building step 3: Failed attempt to allocate 640 Gb
#687
trilisser
opened
1 year ago
0
Not enough RAM to classify reads with large custom database
#686
PeterCx
opened
1 year ago
1
Process manifest files in a deterministic way
#685
ch4rr0
closed
1 year ago
1
speed drop when downloading nt database
#684
trilisser
opened
1 year ago
0
Help with confidence score
#683
tuttigiuperterraa
opened
1 year ago
1
new ftp server for kraken2-build?
#682
rob26220
opened
1 year ago
1
Classification of reads as higher taxon (family) but not as the lower taxon (genus/species)
#681
danarte
opened
1 year ago
0
unable to download nr database
#680
juejun14
opened
1 year ago
1
Download timeout while building standard DB
#679
jeffgauthier
opened
1 year ago
1
Animal library
#678
tuttigiuperterraa
opened
1 year ago
0
Not able to build custom databse using --build switch
#677
self-Shubham
opened
1 year ago
1
Errors installing nt database
#676
dannyionescu
opened
1 year ago
8
Nucleotide masker for kraken2
#675
ch4rr0
closed
1 year ago
4
Nucleotide masker for kraken2
#674
ch4rr0
closed
1 year ago
0
Fix infinite loop when processing sequences with a TaxID of 0
#673
ch4rr0
closed
1 year ago
1
This PR addresses, in a "belt and suspenders" style, an infinite loop caused by sequences with an assigned Taxonomy ID of 0. This issue was observed when building the `nt` database.
#672
ch4rr0
closed
1 year ago
0
Not able to download bacterial library
#671
self-Shubham
closed
1 year ago
4
Interleaved files
#670
andressamv
opened
1 year ago
0
Support for compressed output / interleaved formaat ?
#669
adrienlemeur
opened
1 year ago
0
Downloading vertebrate_mammalian kraken2 database?
#668
danarte
closed
1 year ago
1
unable to install "install_kraken2.sh"
#667
Pisto94
closed
1 year ago
2
Timeout at /home/lizhihua/miniconda3/envs/bracken/lib/5.26.2/Net/FTP.pm line 583
#666
LiZhihua1982
opened
1 year ago
0
Cannot execute download_taxonomy.sh, permission denied
#665
tingning-94
opened
1 year ago
2
Unable to run kraken2-build
#664
raghuramdr
opened
1 year ago
1
kraken2-build not progressing
#663
talnagar
opened
1 year ago
1
Initial commit of dustmasker for kraken2
#662
ch4rr0
closed
1 year ago
1
Unable to download the database: kraken2-build --standard --db kraken2-standard-db/ --threads 42
#661
hebamuh68
closed
1 year ago
5
How to resume a "masking low-complexity regions of downloaded library": add --continue options to resume process
#660
MaryoHg
opened
1 year ago
4
prebuilt database
#659
steamsn
opened
1 year ago
3
false positive with different read len
#658
TomhitsJerry
closed
1 year ago
0
How to check if my custom database complete?
#657
Sabrin2020
opened
1 year ago
2
kraken2-inspect dump_table: unable to allocate hash table memory
#656
Sabrin2020
closed
1 year ago
1
kraken2 download library failing due to segmentation fault
#655
MeriamOs
opened
1 year ago
0
Unable to build Kraken 2 db with kmer len 31 and minimizer len 31
#654
balags1
opened
1 year ago
0
rsync_from_ncbi.pl: unexpected FTP path (new server?)
#653
apn83
opened
1 year ago
4
Difference between genus and unclassified genus
#652
mlarjim
opened
1 year ago
0
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