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Hi samtools,
When running `samtools mpileup` I get a much lower number of bases "piled-up" than what is expected. My best guess after investigating is that soft-clipped reads get counted from 1bp d…
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In addition to the use case where a session token is provided as part of a Federated access model, probably the more common use case is for [using IAM roles in combination with EC2 instances](http://d…
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First of all, thank you for putting together this implementation. We used it in our usecase, to [handle Crypt4GH-encrypted data in a DRS implementation](https://github.com/PacificAnalytics/pa-DRS-Cryp…
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As an sda-user
I want to be able to download specific parts of an encrypted file
In order to be able to get only the region I am interested in
The service currently allows to download specific byte r…
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Any BAM file piped into samtools on Windows results in the same error:
$ cat file.bam | samtools.exe view
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[E::bgzf_read_bl…
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As an gdi-dev
I want to have the latest images from the sensitive data archive, including the re-encrypt service
In order to be able to work with the htsget-rs new version
Tasks:
- [ ] Update the ima…
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There's a few places where an `assert!` is used to check for a condition instead of a `Result` returning an `Err`. It might be nice to have these `assert!`s converted to `Crypt4GHError`s.
For exam…
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If a user sends a public key, re-encrypt the data
related params:
```
- name: Public-Key
in: header
description: Public Encryption key
required: false
…
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This is more to clarify functionality than any sort of bug.
When using BGZF readers, the worker count eagerly evaluates multiple blocks. The means that if you attempt to read a file that is valid u…
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As a developer
I want to be able to supply the c4gh passphrase as an env variable
so that I can use the tool in scripts for automation.