zaeleus noodles issues - Githubissues

zaeleus / noodles

Bioinformatics I/O libraries in Rust

MIT License

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issues

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Explicitly state the indexing of alignment start and end

#281 mbhall88 opened 6 hours ago
0
Performance question

#279 anderspitman closed 3 days ago
0
Create test SAM data

#278 mbhall88 opened 6 days ago
2
QualityScore conversion from fastq

#277 d-cameron opened 6 days ago
2
Help request: using the noodles async FASTQ writer with async compression without corrupting the output

#275 nrminor closed 1 week ago
1
How to write custom bam records

#274 SteampunkIslande closed 1 week ago
1
bgzf/async/reader: Add seeking to an uncompressed position

#273 zaeleus closed 2 weeks ago
0
BED name column limit

#271 ghuls closed 4 weeks ago
1
bed/record: Return ParseError::MissingScore instead of ParseError::Mi…

#270 ghuls closed 1 month ago
1
Can support flush method on writer ?

#269 sharkLoc closed 1 month ago
3
IUPAC codes in VCF REF field

#268 ACEnglish closed 1 month ago
1
fix: error on sequence complement

#267 sharkLoc closed 1 month ago
1
BCF and VCF `record_bufs` return different `RecordBuf`s

#266 tedil closed 1 month ago
2
add queried reader

#265 Crispy13 opened 2 months ago
0
`gff::AsyncReader` gated by async feature

#264 tshauck closed 2 months ago
2
Add Async GFF Reader and/or expose lazy record from string?

#262 tshauck closed 2 months ago
2
Reading entries of file into preallocated buffer

#260 rickymagner closed 2 months ago
3
Missing newlines in `header::record::write_other` when writing collections

#259 tedil closed 2 months ago
1
How to set tag with value in noodles::bam?

#258 Crispy13 closed 2 months ago
2
`sam::header::programs` module is private

#257 jch-13 closed 2 months ago
1
Unexpected EOF on BCF File

#255 tshauck closed 2 months ago
2
`impl<'a> From<bam::record::Name<'a>> for sam::alignment::record_buf::Name` includes trailing NUL

#254 jch-13 closed 2 months ago
1
About method names of `noodles_sam::alignment::record::Flags`

#253 Crispy13 closed 3 months ago
2
Docs typo

#252 Crispy13 closed 3 months ago
2
Getting raw record lines with lazy records

#251 rkimoakbioinformatics closed 3 months ago
2
record_buf object to sam::Record object?

#249 larryns closed 3 months ago
2
util feature

#248 larryns closed 3 months ago
4
sam/io/writer/record: Increase visibility of SAM record CIGAR string serializer

#247 zaeleus closed 3 months ago
2
bgzf MultiThreadedReader Missing Error Message

#246 asgray closed 3 months ago
2
Add new BAM example for full PG entry

#245 jamestwebber closed 3 months ago
2
migrating from 0.49 to 0.65: generating invalid BAM files

#244 jamestwebber closed 4 months ago
2
Async BGZF readers eagerly evaluate blocks

#243 mmalenic closed 4 months ago
2
Parsing VCF fails for ID in header

#241 apraga closed 1 month ago
3
bgzf/multithreaded_writer: Add builder

#238 zaeleus closed 4 months ago
1
BGZF invalid header really strict

#237 andypexai closed 4 months ago
6
Why `Flags::PROPERLY_ALIGNED` instead of `Flags::PROPERLY_PAIRED` as name?

#236 ghuls closed 4 months ago
2
Fixed-length `Character` fields

#235 holtgrewe opened 4 months ago
2
`Send`-able `Repository`?

#234 tshauck closed 4 months ago
2
question: how to convert cigar from bytes.

#233 cauliyang closed 5 months ago
4
Installation error

#231 andyjslee closed 5 months ago
2
Alignment span calculation (bug or misunderstanding)

#230 rob-p closed 5 months ago
4
noodles bam failled to write record with large mapping position.

#229 natir closed 5 months ago
1
noodles sam successfully read the recording but failed to write it

#228 natir closed 5 months ago
2
Seamless parsing of BAM/SAM

#227 mbhall88 closed 5 months ago
4
Documentation is opaque on 0 vs 1 indexing, and whether regions are right-inclusive or not.

#226 vsbuffalo opened 5 months ago
1
fix: lazy vcf overreading into next record

#224 tshauck closed 5 months ago
5
fix: fix range for INFO for lazy vcf record bounds

#223 tshauck closed 5 months ago
1
Question: different coalescing of bytes for index queries?

#222 tshauck closed 6 months ago
2
Lazy reading of BAM records requires reading of the header first

#221 markjschreiber closed 6 months ago
1
Add underlying reader access for CRAM `AsyncReader`

#220 mmalenic closed 7 months ago
1