zaeleus noodles issues - Githubissues

zaeleus / noodles

Bioinformatics I/O libraries in Rust

MIT License

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issues

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How to convert Cigar to its string representation?

#309 kaizhang closed 4 days ago
0
InvalidVersion error

#308 ACEnglish closed 1 week ago
2
Repeated BAM tag field: `OX`

#307 wjwei-handsome closed 2 weeks ago
1
Accept U as a base type and convert to T for BAM.

#306 jkbonfield opened 3 weeks ago
2
"invalid start positions" when reading unmapped cram

#305 HadrienG closed 1 month ago
2
VCF Sample columns

#304 ACEnglish closed 1 month ago
1
`noodles_util`'s `alignment::io::indexed_reader` does not recognize `set_index`

#303 jonghwanyoon closed 1 month ago
1
Error parsing vcf data from ncbi

#302 puli1027 closed 2 months ago
3
Should writing Strings to INFO be escaped

#300 holtgrewe closed 2 months ago
2
GTF parser fails when textual attributes contain semicolons

#299 kaizhang closed 2 months ago
1
How to get tags

#297 Liripo closed 2 months ago
0
util/alignment/async: Add async indexed reader

#296 zaeleus opened 2 months ago
0
cram/io/writer/builder: Rename Builder::build_with_writer to Builder::build_from_writer

#295 zaeleus closed 2 months ago
0
cram/async/io/writer: Add convenience method to write file definition and SAM header

#294 zaeleus closed 2 months ago
0
cram/async/io/writer: Add alignment record writer

#293 zaeleus closed 2 months ago
0
Add async alignment writer

#292 mbhall88 closed 2 months ago
2
gtf parse error

#291 qingyun039 closed 3 months ago
1
adds example for how to use the multi-threaded bgzf reader with bams

#290 bwlang closed 3 months ago
1
Convenience methods for SAM records

#289 mbhall88 closed 3 months ago
2
Add async alignment reader

#288 mbhall88 closed 3 months ago
2
Support fastq comments/attributes/metadata

#287 d-cameron closed 3 months ago
3
Unified async alignment reader/writer

#286 mbhall88 closed 2 months ago
3
templeate_length() for long reads

#285 Psy-Fer closed 4 months ago
2
sam/alignment/record/sequence: Add a method signature to return a single base at a given index

#283 zaeleus closed 4 months ago
3
Trait bounds changes in noodles_sam 0.62.0

#282 mbhall88 closed 4 months ago
1
Explicitly state the indexing of alignment start and end

#281 mbhall88 closed 4 months ago
1
Performance question

#279 anderspitman closed 4 months ago
0
Create test SAM data

#278 mbhall88 closed 4 months ago
2
QualityScore conversion from fastq

#277 d-cameron closed 3 months ago
2
Help request: using the noodles async FASTQ writer with async compression without corrupting the output

#275 nrminor closed 4 months ago
1
How to write custom bam records

#274 SteampunkIslande closed 4 months ago
4
bgzf/async/reader: Add seeking to an uncompressed position

#273 zaeleus closed 4 months ago
0
BED name column limit

#271 ghuls closed 5 months ago
1
bed/record: Return ParseError::MissingScore instead of ParseError::Mi…

#270 ghuls closed 5 months ago
1
Can support flush method on writer ?

#269 sharkLoc closed 5 months ago
3
IUPAC codes in VCF REF field

#268 ACEnglish closed 6 months ago
1
fix: error on sequence complement

#267 sharkLoc closed 6 months ago
1
BCF and VCF `record_bufs` return different `RecordBuf`s

#266 tedil closed 6 months ago
2
add queried reader

#265 Crispy13 opened 6 months ago
0
`gff::AsyncReader` gated by async feature

#264 tshauck closed 6 months ago
2
Add Async GFF Reader and/or expose lazy record from string?

#262 tshauck closed 6 months ago
2
Reading entries of file into preallocated buffer

#260 rickymagner closed 6 months ago
3
Missing newlines in `header::record::write_other` when writing collections

#259 tedil closed 6 months ago
1
How to set tag with value in noodles::bam?

#258 Crispy13 closed 6 months ago
2
`sam::header::programs` module is private

#257 jch-13 closed 7 months ago
1
Unexpected EOF on BCF File

#255 tshauck closed 7 months ago
2
`impl<'a> From<bam::record::Name<'a>> for sam::alignment::record_buf::Name` includes trailing NUL

#254 jch-13 closed 7 months ago
1
About method names of `noodles_sam::alignment::record::Flags`

#253 Crispy13 closed 7 months ago
2
Docs typo

#252 Crispy13 closed 7 months ago
2
Getting raw record lines with lazy records

#251 rkimoakbioinformatics closed 7 months ago
2