issues
search
zaeleus
/
noodles
Bioinformatics I/O libraries in Rust
MIT License
477
stars
53
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Alignment span calculation (bug or misunderstanding)
#230
rob-p
closed
6 months ago
4
noodles bam failled to write record with large mapping position.
#229
natir
closed
6 months ago
1
noodles sam successfully read the recording but failed to write it
#228
natir
closed
6 months ago
2
Seamless parsing of BAM/SAM
#227
mbhall88
closed
6 months ago
4
Documentation is opaque on 0 vs 1 indexing, and whether regions are right-inclusive or not.
#226
vsbuffalo
closed
1 month ago
1
fix: lazy vcf overreading into next record
#224
tshauck
closed
7 months ago
5
fix: fix range for INFO for lazy vcf record bounds
#223
tshauck
closed
7 months ago
1
Question: different coalescing of bytes for index queries?
#222
tshauck
closed
7 months ago
2
Lazy reading of BAM records requires reading of the header first
#221
markjschreiber
closed
8 months ago
1
Add underlying reader access for CRAM `AsyncReader`
#220
mmalenic
closed
8 months ago
1
Concurrent reading/decompression of BAM files.
#219
Adoni5
closed
8 months ago
3
noodles implementation is slower than rust-htslib, did I do something suboptimal?
#218
bwlang
closed
7 months ago
5
Build Error on Windows
#217
tshauck
closed
9 months ago
1
csi/writer: End position of a chunk is using wrong virtual position
#216
zaeleus
closed
9 months ago
0
csi: tabix header indices are off by one
#215
zaeleus
closed
9 months ago
2
How to index a VCF statically or on the fly
#214
nh13
opened
9 months ago
4
Nondeterministic TBI index creation
#213
holtgrewe
closed
10 months ago
1
fix: add get_ref/get_mut/into_inner for noodles-vcf
#211
holtgrewe
closed
10 months ago
4
Add reserve method to Cigar for use in `get_cigar`
#206
tshauck
closed
10 months ago
6
How to extract pileup information from a bam file?
#205
huangnengCSU
closed
11 months ago
2
sam/record/data/field/tag: Add const initializer
#204
zaeleus
closed
11 months ago
2
Question about number in META Lines
#203
holtgrewe
closed
11 months ago
1
vcf/header/parser: Allow for v4.2 PEDIGREE format fields
#202
xiamaz
closed
11 months ago
0
Noodles-vcf generates invalid record error on PEDIGREE header
#201
xiamaz
closed
11 months ago
4
query_unmapped fails
#200
drtconway
closed
11 months ago
3
feat: add lazy record reader to vcf async reader
#199
tshauck
closed
11 months ago
1
query sorted bam for unmapped reads
#198
drtconway
closed
12 months ago
1
Should record::data::field::tag::other be public?
#197
jamestwebber
closed
1 year ago
7
Number of variants from index file
#195
kriestof
closed
1 year ago
2
bgzf::AsyncReader reference to inner reader
#194
mmalenic
closed
1 year ago
2
Performance issues with vcf reader
#193
kriestof
closed
1 year ago
5
How to access FORMAT fields in VCF records?
#192
rickymagner
closed
1 year ago
2
mutliple `Position` definitions
#191
brentp
closed
1 year ago
3
GFF parser does not allow application-specific directives
#190
J-Wall
closed
1 year ago
1
`noodles_fasta::reader::records::Records` returns an error on empty lines
#189
jch-13
closed
1 year ago
3
util/variant: Add an indexed reader
#188
zaeleus
closed
1 year ago
7
`invalid CIGAR op length` when reference sequence length bigger than ((1>>28) -1)
#187
wjwei-handsome
closed
1 year ago
2
refget: Update to v2.0.0 specifications
#186
juliangehring
closed
1 year ago
3
Refget v2.0.0
#185
juliangehring
closed
1 year ago
3
refget: Allow metadata/md5 to be optional
#184
juliangehring
closed
1 year ago
1
Allow multiple values per attribute entry for GFF
#183
J-Wall
closed
1 year ago
3
Index BCF Query "invalid chrom"
#181
tshauck
closed
1 year ago
1
refget/client: Add request builder for metadata
#180
zaeleus
closed
1 year ago
0
Invalid data when reading a BAM file
#179
bistace
closed
1 year ago
3
[bam] makes sequence writer no-op for empty sequence.
#177
ArtRand
closed
1 year ago
0
How to (async) write secondary BAM records
#176
ArtRand
closed
1 year ago
4
Unable to parse BED files which have non-integer score values
#175
J-Wall
closed
1 year ago
4
Update Cargo.toml
#174
Dylan-DPC
closed
1 year ago
1
Support reading files into tabular data formats?
#173
endrebak
closed
1 year ago
1
`csi::Index` does not return the same values as `bai::Index` did for `first_record_in_last_linear_bin_start_position`
#172
mmalenic
closed
1 year ago
1
Previous
Next