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zaeleus
/
noodles
Bioinformatics I/O libraries in Rust
MIT License
512
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record_buf object to sam::Record object?
#249
larryns
closed
7 months ago
2
util feature
#248
larryns
closed
7 months ago
4
sam/io/writer/record: Increase visibility of SAM record CIGAR string serializer
#247
zaeleus
closed
7 months ago
2
bgzf MultiThreadedReader Missing Error Message
#246
asgray
closed
8 months ago
2
Add new BAM example for full PG entry
#245
jamestwebber
closed
7 months ago
2
migrating from 0.49 to 0.65: generating invalid BAM files
#244
jamestwebber
closed
8 months ago
2
Async BGZF readers eagerly evaluate blocks
#243
mmalenic
closed
8 months ago
2
Parsing VCF fails for ID in header
#241
apraga
closed
5 months ago
3
bgzf/multithreaded_writer: Add builder
#238
zaeleus
closed
8 months ago
1
BGZF invalid header really strict
#237
andypexai
closed
8 months ago
6
Why `Flags::PROPERLY_ALIGNED` instead of `Flags::PROPERLY_PAIRED` as name?
#236
ghuls
closed
8 months ago
2
Fixed-length `Character` fields
#235
holtgrewe
opened
9 months ago
2
`Send`-able `Repository`?
#234
tshauck
closed
9 months ago
2
question: how to convert cigar from bytes.
#233
cauliyang
closed
9 months ago
4
Installation error
#231
andyjslee
closed
9 months ago
2
Alignment span calculation (bug or misunderstanding)
#230
rob-p
closed
9 months ago
4
noodles bam failled to write record with large mapping position.
#229
natir
closed
9 months ago
1
noodles sam successfully read the recording but failed to write it
#228
natir
closed
9 months ago
2
Seamless parsing of BAM/SAM
#227
mbhall88
closed
9 months ago
4
Documentation is opaque on 0 vs 1 indexing, and whether regions are right-inclusive or not.
#226
vsbuffalo
closed
4 months ago
1
fix: lazy vcf overreading into next record
#224
tshauck
closed
10 months ago
5
fix: fix range for INFO for lazy vcf record bounds
#223
tshauck
closed
10 months ago
1
Question: different coalescing of bytes for index queries?
#222
tshauck
closed
11 months ago
2
Lazy reading of BAM records requires reading of the header first
#221
markjschreiber
closed
11 months ago
1
Add underlying reader access for CRAM `AsyncReader`
#220
mmalenic
closed
11 months ago
1
Concurrent reading/decompression of BAM files.
#219
Adoni5
closed
12 months ago
3
noodles implementation is slower than rust-htslib, did I do something suboptimal?
#218
bwlang
closed
10 months ago
5
Build Error on Windows
#217
tshauck
closed
1 year ago
1
csi/writer: End position of a chunk is using wrong virtual position
#216
zaeleus
closed
1 year ago
0
csi: tabix header indices are off by one
#215
zaeleus
closed
1 year ago
2
How to index a VCF statically or on the fly
#214
nh13
opened
1 year ago
4
Nondeterministic TBI index creation
#213
holtgrewe
closed
1 year ago
1
fix: add get_ref/get_mut/into_inner for noodles-vcf
#211
holtgrewe
closed
1 year ago
4
Add reserve method to Cigar for use in `get_cigar`
#206
tshauck
closed
1 year ago
6
How to extract pileup information from a bam file?
#205
huangnengCSU
closed
1 year ago
2
sam/record/data/field/tag: Add const initializer
#204
zaeleus
closed
1 year ago
2
Question about number in META Lines
#203
holtgrewe
closed
1 year ago
1
vcf/header/parser: Allow for v4.2 PEDIGREE format fields
#202
xiamaz
closed
1 year ago
0
Noodles-vcf generates invalid record error on PEDIGREE header
#201
xiamaz
closed
1 year ago
4
query_unmapped fails
#200
drtconway
closed
1 year ago
3
feat: add lazy record reader to vcf async reader
#199
tshauck
closed
1 year ago
1
query sorted bam for unmapped reads
#198
drtconway
closed
1 year ago
1
Should record::data::field::tag::other be public?
#197
jamestwebber
closed
1 year ago
7
Number of variants from index file
#195
kriestof
closed
1 year ago
2
bgzf::AsyncReader reference to inner reader
#194
mmalenic
closed
1 year ago
2
Performance issues with vcf reader
#193
kriestof
closed
1 year ago
5
How to access FORMAT fields in VCF records?
#192
rickymagner
closed
1 year ago
2
mutliple `Position` definitions
#191
brentp
closed
1 year ago
3
GFF parser does not allow application-specific directives
#190
J-Wall
closed
1 year ago
1
`noodles_fasta::reader::records::Records` returns an error on empty lines
#189
jch-13
closed
1 year ago
3
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