zaeleus noodles issues - Githubissues

zaeleus / noodles

Bioinformatics I/O libraries in Rust

MIT License

482 stars 52 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Should writing Strings to INFO be escaped

#300 holtgrewe closed 6 days ago
2
GTF parser fails when textual attributes contain semicolons

#299 kaizhang closed 1 week ago
1
How to get tags

#297 Liripo closed 2 weeks ago
0
util/alignment/async: Add async indexed reader

#296 zaeleus opened 2 weeks ago
0
cram/io/writer/builder: Rename Builder::build_with_writer to Builder::build_from_writer

#295 zaeleus closed 2 weeks ago
0
cram/async/io/writer: Add convenience method to write file definition and SAM header

#294 zaeleus closed 2 weeks ago
0
cram/async/io/writer: Add alignment record writer

#293 zaeleus closed 2 weeks ago
0
Add async alignment writer

#292 mbhall88 closed 2 weeks ago
2
gtf parse error

#291 qingyun039 closed 3 weeks ago
1
adds example for how to use the multi-threaded bgzf reader with bams

#290 bwlang closed 3 weeks ago
1
Convenience methods for SAM records

#289 mbhall88 closed 1 month ago
2
Add async alignment reader

#288 mbhall88 closed 4 weeks ago
2
Support fastq comments/attributes/metadata

#287 d-cameron closed 1 month ago
3
Unified async alignment reader/writer

#286 mbhall88 closed 2 weeks ago
3
templeate_length() for long reads

#285 Psy-Fer closed 1 month ago
2
sam/alignment/record/sequence: Add a method signature to return a single base at a given index

#283 zaeleus closed 1 month ago
3
Trait bounds changes in noodles_sam 0.62.0

#282 mbhall88 closed 1 month ago
1
Explicitly state the indexing of alignment start and end

#281 mbhall88 closed 1 month ago
1
Performance question

#279 anderspitman closed 2 months ago
0
Create test SAM data

#278 mbhall88 closed 1 month ago
2
QualityScore conversion from fastq

#277 d-cameron closed 1 month ago
2
Help request: using the noodles async FASTQ writer with async compression without corrupting the output

#275 nrminor closed 2 months ago
1
How to write custom bam records

#274 SteampunkIslande closed 2 months ago
4
bgzf/async/reader: Add seeking to an uncompressed position

#273 zaeleus closed 2 months ago
0
BED name column limit

#271 ghuls closed 2 months ago
1
bed/record: Return ParseError::MissingScore instead of ParseError::Mi…

#270 ghuls closed 3 months ago
1
Can support flush method on writer ?

#269 sharkLoc closed 3 months ago
3
IUPAC codes in VCF REF field

#268 ACEnglish closed 3 months ago
1
fix: error on sequence complement

#267 sharkLoc closed 3 months ago
1
BCF and VCF `record_bufs` return different `RecordBuf`s

#266 tedil closed 3 months ago
2
add queried reader

#265 Crispy13 opened 3 months ago
0
`gff::AsyncReader` gated by async feature

#264 tshauck closed 3 months ago
2
Add Async GFF Reader and/or expose lazy record from string?

#262 tshauck closed 4 months ago
2
Reading entries of file into preallocated buffer

#260 rickymagner closed 4 months ago
3
Missing newlines in `header::record::write_other` when writing collections

#259 tedil closed 4 months ago
1
How to set tag with value in noodles::bam?

#258 Crispy13 closed 4 months ago
2
`sam::header::programs` module is private

#257 jch-13 closed 4 months ago
1
Unexpected EOF on BCF File

#255 tshauck closed 4 months ago
2
`impl<'a> From<bam::record::Name<'a>> for sam::alignment::record_buf::Name` includes trailing NUL

#254 jch-13 closed 4 months ago
1
About method names of `noodles_sam::alignment::record::Flags`

#253 Crispy13 closed 4 months ago
2
Docs typo

#252 Crispy13 closed 5 months ago
2
Getting raw record lines with lazy records

#251 rkimoakbioinformatics closed 5 months ago
2
record_buf object to sam::Record object?

#249 larryns closed 5 months ago
2
util feature

#248 larryns closed 5 months ago
4
sam/io/writer/record: Increase visibility of SAM record CIGAR string serializer

#247 zaeleus closed 5 months ago
2
bgzf MultiThreadedReader Missing Error Message

#246 asgray closed 5 months ago
2
Add new BAM example for full PG entry

#245 jamestwebber closed 5 months ago
2
migrating from 0.49 to 0.65: generating invalid BAM files

#244 jamestwebber closed 6 months ago
2
Async BGZF readers eagerly evaluate blocks

#243 mmalenic closed 6 months ago
2
Parsing VCF fails for ID in header

#241 apraga closed 3 months ago
3