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zaeleus
/
noodles
Bioinformatics I/O libraries in Rust
MIT License
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refget: Allow metadata/md5 to be optional
#184
juliangehring
closed
1 year ago
1
Allow multiple values per attribute entry for GFF
#183
J-Wall
closed
1 year ago
3
Index BCF Query "invalid chrom"
#181
tshauck
closed
1 year ago
1
refget/client: Add request builder for metadata
#180
zaeleus
closed
1 year ago
0
Invalid data when reading a BAM file
#179
bistace
closed
1 year ago
3
[bam] makes sequence writer no-op for empty sequence.
#177
ArtRand
closed
1 year ago
0
How to (async) write secondary BAM records
#176
ArtRand
closed
1 year ago
4
Unable to parse BED files which have non-integer score values
#175
J-Wall
closed
1 year ago
4
Update Cargo.toml
#174
Dylan-DPC
closed
1 year ago
1
Support reading files into tabular data formats?
#173
endrebak
closed
1 year ago
1
`csi::Index` does not return the same values as `bai::Index` did for `first_record_in_last_linear_bin_start_position`
#172
mmalenic
closed
1 year ago
1
Read group platform unnecessarily strict
#171
drtconway
closed
1 year ago
2
gtf reader failed when there is no semicolon after the last attribute
#169
DongzeHE
closed
1 year ago
1
Accessing VCF record ID?
#168
holtgrewe
closed
1 year ago
5
Set compression level for writing BAM
#167
nh13
closed
1 year ago
3
fastq/reader can panic on invalid FASTQ files with mixed line endings
#166
juliangehring
closed
1 year ago
3
fastq/record: Add definition for name and description
#165
zaeleus
closed
1 year ago
0
Implement Debug for Sample?
#164
holtgrewe
closed
1 year ago
1
Support for more structural variant (sub) types?
#163
holtgrewe
closed
1 year ago
3
Example for creating a `##contig=<>` line from scratch?
#162
holtgrewe
closed
1 year ago
5
FASTQ description
#161
juliangehring
closed
1 year ago
3
ENH: example of adding non Standard INFO to header.
#160
brentp
closed
1 year ago
2
Add util as a feature to noodles crate
#159
holtgrewe
closed
1 year ago
3
Support querying for SAM/GTF/GFF records
#158
claymcleod
closed
1 year ago
1
Add index builder for CSI
#157
claymcleod
closed
1 year ago
0
Fast copying of bam files
#156
jdidion
closed
1 year ago
4
Publishing noodles-htsget
#155
mmalenic
closed
1 year ago
1
Storing a vcf::records::Records in a struct
#154
holtgrewe
closed
1 year ago
3
Noodle-sam compilation error with two different noodle-bgzf versions
#153
bio-xy
closed
1 year ago
3
util: Variant writer
#152
malthesr
closed
1 year ago
3
bcf/writer: Missing genotype field
#151
malthesr
closed
1 year ago
1
util/variant: Add writer
#150
zaeleus
closed
1 year ago
2
util: Variant reader
#149
malthesr
closed
1 year ago
1
bgzf/gzi/reader: wrap gzi Reader in a BufReader
#148
zdk123
closed
1 year ago
2
Faster reader query (#146)
#147
holtgrewe
closed
1 year ago
4
fasta_query is much slower than samtools faidx on bgzip-ed files
#146
holtgrewe
closed
1 year ago
2
What is a sequence repository?
#145
holtgrewe
closed
1 year ago
1
Also recognize "bgz" suffix as bgziped for indexed fasta reader
#144
holtgrewe
closed
1 year ago
1
Add BufRead option for gzi?
#143
zdk123
closed
1 year ago
2
Support for bgzip FASTA files
#142
holtgrewe
closed
1 year ago
2
Making an BED reader where number of columns unknown
#141
Euphrasiologist
closed
1 year ago
3
Question about async read bam
#140
nihilee
closed
1 year ago
4
Can bgzip multi-threading be combined with random access reads?
#139
zdk123
opened
1 year ago
1
Track bam reading state and error or transparently advance the stream.
#138
d-cameron
closed
8 months ago
1
`InvalidRecord(InvalidInfo(TypeMismatch("Integer", "Float")))` in BCF parsing
#137
Euphrasiologist
closed
1 year ago
2
`TryFromUByteError(255)` in CRAM parsing
#136
Euphrasiologist
closed
1 year ago
1
`bcf::Writer::write_vcf_record` writes wrong `FORMAT/GT`
#135
malthesr
closed
1 year ago
1
Parse pedigree field more completely
#134
Euphrasiologist
closed
1 year ago
2
noodles bgzf: Reader breaks on concatenated bgzip files
#133
omicsorama
closed
1 year ago
4
panic when removing SAM tags
#132
d-cameron
closed
1 year ago
2
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