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Hello,
I get an issue when a try to run STAR-Fusion on Ubuntu 20.04.2 LTS :
`STAR-Fusion --CPU 24 --genome_lib_dir /tmpdata/Gene_Fusion/GRCh37_v19/GRCh37_gencode_v19_CTAT_lib_Mar012021.plug-n-p…
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Hi,
I am trying to run star-fusion with the command:
```
STAR-Fusion \
--genome_lib_dir /fdb/CTAT/__genome_libs_StarFv1.10/GRCh37_gencode_v19_CTAT_lib_Mar012021/ctat_genome_lib_build_dir/ …
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I downloaded the latest version of starfusion singularity image
star-fusion.v1.11.1.simg
Then used the following command to generate a Rat novergicus library with the latest ensembl references a…
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Hi,
I ran STAR using this command:
STAR --runThreadN 12 \
--genomeDir
ref_genome.fa.star.idx \
--readFilesIn R1_val_1.fq.gz R2_val_2.fq.gz \
--outReadsUnmapped None \
--twopassMode Basic \…
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add this to the ctat genome lib builder for FI for quick retrieval instead of building on the fly
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Hi, I'm using ctat_mutations.v3.0.0.simg and GRCh37_gencode_v19_CTAT_lib_Mar012021.plug-n-play and I get the following error:
EXITING: FATAL INPUT ERROR: unrecognized parameter name "genomeType" in i…
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Hi
Following the procedure of CTAT MUTATION in DOCKER, with the DEMO data from BroadInstitute, the cancer.tab file had only 4 mutations instead of the big list of mutations mentioned in the Table, at…
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Hi,
I am trying to run star fusion with versions:
Star-fusion: star-fusion.v1.10.0.simg
CTAT_RESOURCE_LIB version: GRCh38_gencode_v37_CTAT_lib_Mar012021.plug-n-play
[W::fai_fetch] Reference ch…
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Hi,
I use singularity (version 3.8.1), ctat_mutations.v3.2.0.simg and the testing read files to call the mutation. The pipeline fails in "Annotating VCF: Calculating ED" step. Do you have any idea …
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-sample contains 131994
* Running CMD: /home/greenland/anaconda3/envs/fusion/lib/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /home/greenland/LZY/Fusion/CTAT_lib/GRCh38_…