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Hi Vadim,
Do you know is DIA-NN compatible with Microsoft Hyper-V and the creation of child images all running the same parent image with a DIA-NN version installed? Or do you know of anyone using …
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Hi Vadim,
Thanks for providing the exceptional software for the community.
I have a question about whether DIA-NN can detect proteins/peptides containing non-standard amino acids? If yes, what …
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Hi Vadim.
I analyzed the DIA data acquired by Q-Exactive using DIA-NN, but the output report did not assign any proteins or peptides.
What could be the cause of this?
The measured samples were BS…
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Do you have any plans to support timsTOF data? Alphapeptdeep and DIA-NN both natively support timsTOF data, why the requirement to convert to mzML?
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Hey Vlad,
I'm having an issue when I try to analyze samples using a spectral library generated from a previous search. For context, I'm trying to analyze the proteome of a fungal organism in the se…
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Hi Vadim and team,
I have done 3 plex dimethyl labeling on samples and am now trying to analyze them following the steps outlined in the plexDIA section. But as you can see below, after finished wi…
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Hi All,
I'm working on this project where I add light and heavy-labeled peptides together, mix them and run on an Orbitrap, using LC-DIA.
Interestingly, when I create my own peptide library usi…
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Hi Vadim,
Hope this message finds you well.
I am currently searching in DIA-NN using two proteomes- mouse and human, making the search space rather large. Do you have any advice on how to make the…
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Hi,
I have generated a DDA spectral library following the DIA-SpecLib_Quant workflow. I am trying to quantify the DIA files in a separate run by providing the library.tsv file , however it shows an …
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### Description of feature
Hello quantms team,
I would like to request the addition of support for the `.dia` file format as an input option in the **quantms** pipeline. Currently, as per the do…