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With low resolution/direction dMRI data, you have limited options for tractography and will suffer from losing crossing fibers when using DTI. We could show this in a tutorial. You could also use a te…
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Thank you so much for releasing all of this great data. I am woking with some of the imaging data and I found 8 columns in the NDA hosted release of the DEAP datasets that appear to have the NDA varia…
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**Describe the Issue**
I ran pydesigner (resuming from a partial run), and it terminated (without any messages) at the following stage:
```
$ docker run -it --rm -v /home/avanti.shrikumar/repos/a…
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I'm working on an update to the Intro to Diffusion episode (1). Here's an initial render of it: http://www.nipreps.org/nipreps-book/dwi/02-intro_dmri.html
Still needs more work but what I'd really …
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Consecutive Philips dMRI scans often have inconsistent intensity scaling. We can often fix this in post-processing with `dwicat`, but not, for example, for data acquired with different TE. I would the…
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do not automatically take the closest to the 1st DWI, if, e.g., there is huge motion between two volumes.
Example data:
toronto/E22576/dmri
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# Tracking microstructural biomarkers of Alzheimer’s Disease via diffusion MRI
The Alzheimer’s Disease Neuroimaging Initiative (ADNI) is a longitudinal natural history study. It is a large multicen…
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I am putting those here for now to let everyone know they exist and to help future me find them again.
Those carptentry courses are drafts and work in progress as far as I know but it would make se…
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## Project info
**Title:**
Sharing information across voxels with Bayesian hierarchical modelling to improve brain microstructure mapping
**Project lead:**
Paddy Slator (email: p.slat…
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Hello,
I am currently in the process of running the Template Creation Step for the dMRI Harmonization Pipeline. As part of the preparation, I executed ./pipeline_test.sh to verify that the template…