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https://doi.org/10.1101/163220
> Motivation: The powerful learning ability of a convolutional neural network (CNN) to perform functional classification of DNA/RNA sequences could provide valuable c…
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Hello,
when I run diamond on AA fasta files, it sometimes fails claiming there are only DNA letters even if that is not true.
Looking in the code I see this conforms with the logic.
This concerns t…
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It seems that in AptaCluster, you are performing clustering with the entire DNA sequences. In RNA aptamers, the DNA sequences contains T7 promoter which will not appear in RNA aptamer molecules. So I …
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Hello,
Enformer looks great to predict gene expression. Is there a piprline to run Enformer?
` I have another question. I have many DNA sequences with different length. Now I want to know …
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code:
```
dna_path = "./1.dna"
target = "tctccg"
dna = snap.parse(dna_path)
seq = dna.get_dna_sequence().upper()
dna.set_dna_sequence(seq.replace(target.upper(), dna_seq))
dna.write("1_new.dna"…
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### LeetCode Username
sayank2002
### Problem Number, Title, and Link
https://leetcode.com/problems/repeated-dna-sequences/
### Bug Category
Missing test case *(Incorrect/Inefficient Code getting …
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The Smith-Waterman algorithm is essentially a paiwise sequence alignment algorithm typically used in bioinformatics to optimally align two (e.g. DNA) sequences.
The Smith-Waterman algorithm can be s…
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* **ARBA rule (ID and label):**
GO:0140097 | catalytic activity, acting on DNA | IEA with ARBA00027986 | GO_REF:0000117
* **Sequences with problematic annotation (ID + gene/protein name):**
p…
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Thanks for sharing this crate with the community Jeff. It looks really clean!
I have some suggestions for additional codecs to support masked sequences. Of course, I can easily just implement these…
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Hello,
I am trying to run an analysis on a dataset containing both microsatellites and DNA sequences ([M_S.zip](https://github.com/diyabc/diyabcGUI/files/8079021/M_S.zip)) on version 1.1.1, but the p…
EP-12 updated
2 years ago