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By their name, it's possible to infer that ChEBI entries like [nicotinic acetylcholine receptor agonist](http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:47958) have a relation to some sort of ext…
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After generating lots of triples from ChEBI by reasoning over some of the hierarchical information in ExPASy and combining some of the curated data in this repository, it would be a good idea to dump …
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Instead of BRENDA, generate hyperlinks to Expansy Enzymes, which allows search-initialization via hyperlink
(e.g. see https://enzyme.expasy.org/EC/1.2.-.-)
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**Describe the bug**
Using GraphFormatConvertor to go from nx to pyg graph results in a doubling of the number of edges indicated by edge_index (this means we are going from undirected nx edges to di…
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This issue is relate to the CL issue #832:
https://github.com/obophenotype/cell-ontology/issues/832
initially raised by @amadeusX, and discussed by @cmungall and @addiehl
The goal here is to co…
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Hi.
I'm new in molecular dynamics. May I ask several silly questions?
1. How to generate the input file with MDtraj format like .xct and .gro?
2. If the target protein does not have crystal stru…
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* **Term to be merged: Provide GO ID and term label**
GO:0008705 Methionine synthase
methionine synthase activity
Catalysis of the reaction: (6S)-5-methyl-5,6,7,8-tetrahydrofolate + L-homocystein…
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GO:0101021 estrogen 2-hydroxylase activity lacks EC/RHEA cross references.
The definition reference PMID:14559847 is also cited by
RHEA:47208 estrone + O2 + reduced [NADPH--hemoprotein reductase] …
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Hello! I was able to get the tool to work and have analyzed two Hugo et al., 2016 patients. I am reviewing the outputs from `frequency_stage3_verbosity1_uid_gene_symbol_coord_mean_mle.txt` and have a …
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It appears that the cell line metadata for GDSC1000 (and likely other datasets, assuming they were processed in a similar manner) is corrupted some cell lines.
Specifically, cell lines which contai…