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bhklab
/
PharmacoGx
R package to analyze large-scale pharmacogenomic datasets.
http://pharmacodb.pmgenomics.ca
GNU General Public License v3.0
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Update of Datasets to Recent Versions?
#162
KatynaSada
opened
2 months ago
0
Issue with drugPerturbationSig function in PharmacoGx package
#161
pijush1285
opened
4 months ago
0
Static QC Updates for new GDSC Pset
#160
raymond126
opened
5 months ago
2
Bioconductor Warnings
#159
jjjermiah
closed
4 months ago
0
156 warning on bioc
#158
jjjermiah
closed
5 months ago
0
Add better GHA to packages
#157
jjjermiah
opened
5 months ago
0
Warning on BIOC
#156
jjjermiah
closed
4 months ago
0
Build warning on BIOC
#155
jjjermiah
closed
4 months ago
1
chore: add magicaxis function back
#154
jjjermiah
closed
7 months ago
0
Devel
#153
jjjermiah
closed
7 months ago
0
Help analyzing existing Datasets [Question]
#152
nickhsmith
opened
7 months ago
0
Warning messages for checkPsetStructure function of GDSC2020v2 Pset
#151
raymond126
closed
4 months ago
0
Wrong explanation of AUC in computeAUC Description
#150
sisiranair
opened
1 year ago
0
computeAUC computes AAC
#149
KatynaSada
opened
1 year ago
0
NCI60 PharmacoSet is different
#148
KatynaSada
closed
5 months ago
2
Devel
#147
jjjermiah
closed
1 year ago
0
added windows and mac GHA
#146
jjjermiah
closed
1 year ago
0
Devel
#145
jjjermiah
closed
1 year ago
0
fixing logLogistic Fxn
#144
jjjermiah
closed
1 year ago
0
not download CMAp
#143
Zhengly-FMU
closed
1 year ago
2
verification error from checkPsetStructure(pSet)
#142
gabora
opened
1 year ago
0
computeIC50 function returns unexpected value
#141
cscheeder
closed
1 year ago
0
PharmacoSet constructor typos
#140
gabora
closed
1 year ago
1
computeIC50 function gives unexpected result
#139
cscheeder
closed
1 year ago
0
abort object when download from orchestra web instead of downloadPSet
#138
mugpeng
opened
1 year ago
0
fixing a typo
#137
gabora
closed
1 year ago
0
Missing file "drugid_not_in_drugs_with_ids.csv" from rPharmacoDI/scripts/downloadAndExtractPharmacoSets.R
#136
tonydisera
opened
1 year ago
0
no slot of name "sample" for this object of class "PharmacoSet"
#135
vittoriofortino84
opened
1 year ago
0
callingWaterfall function questions
#134
cl146
opened
1 year ago
0
filterNoisyCurves function
#133
shwetha141
closed
1 year ago
1
Add drug combination vignette
#132
ChristopherEeles
closed
1 year ago
0
Which version of ConnectivityMap can be accessed?
#131
AnjaliS1
opened
1 year ago
2
summarizeSensitivityProfiles not working, similar to issue#124
#130
cicGuoH
closed
1 year ago
3
Propogating computeSynergy functions into PharmacoGx
#129
ChristopherEeles
closed
1 year ago
0
Changed `estimateProjParams` implementaion with `.fitCurve2`
#128
ff98li
closed
1 year ago
0
pkgdown GHA debugging
#127
ChristopherEeles
closed
1 year ago
0
Merge new ZIP delta function to BioC
#126
ChristopherEeles
closed
2 years ago
0
Refactored ZIP-delta related functions.
#125
ff98li
closed
2 years ago
0
summarizeMolecularProfiles not working
#124
shwetha141
opened
2 years ago
9
Fix downloadPSet to automatically update class structure
#123
ChristopherEeles
closed
2 years ago
0
no existing definition for function 'treatmentResponse'
#121
LiNk-NY
closed
2 years ago
1
Basic synergy metrics
#119
ChristopherEeles
closed
2 years ago
0
fixed bugs related to using sProfiles in drugSensSig
#118
p-smirnov
closed
2 years ago
0
increasing the default precision so that the pattern search tends to …
#117
p-smirnov
closed
2 years ago
0
update tests loglogisticreg
#116
ChristopherEeles
closed
2 years ago
0
Feature slot rename chris
#115
ChristopherEeles
closed
2 years ago
2
IC50 published vs recomputed
#114
kris-nader
closed
2 years ago
1
Update drugDoseResponseCurve.R
#113
p-smirnov
closed
2 years ago
2
extending tests to make them hopefully more reliable
#112
p-smirnov
closed
2 years ago
0
Permutation sigs merge
#111
p-smirnov
closed
2 years ago
0
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