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I am trying to use **to_freesurfer.py** with the output of my own pipeline (rather than _timeseries_corrected_runXX.nii_ from **prisma_preproc.py**) to align my denoised data to freesurfer (e.g. ICA-…
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Hello. I am trying to run fmriprep on this dataset
> https://brainlife.io/datasets/5e2f913057e7f20020083083#%7B%22query%22%3A%22%20ADHD200%22%2C%22datatypes%22%3A%5B%5D%7D
This dataset is hosted v…
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Hey there,
I'm having an issue with the "normalization of functional data through T1w space to template space" step. As you can see in my cohort file, the input is a volume in OASIS standard space…
mgirn updated
3 years ago
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### Describe the bug
Hi,
I have managed to run the default pipeline on a single subject using 1GB of RAM and 1 core, now I'd like to speed things up, my server has 800gb of ram and 38 cores but when…
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Hi expert,
I tried pNet by using fmriprep preprocessed data, with sub-001_task-rest_space-MNI152NLin2009cAsym_desc-preproc_bold.nii as input data, and set the config file with the following code:
``…
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Hi,
I pre-processed resting state data using fMRIprep 20.1.1. This data set contain 20 subjects, 2 sessions for each subject, and 4 runs for each session. I used SpinEcho field maps to do the susce…
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**Describe the bug**
We are trying to run censoring on a group of subjects and for one subject, we got the error described below.
**Design File**
```
#!/usr/bin/env bash
###################…
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### What happened?
aCompCor mask may include gray mask voxels for some participants. It appears the procedure "_a mask of pixels that likely contain a volume fraction of GM is subtracted from the aCo…
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We are agnostic about what form experimental metadata takes. This is to help adoption as labs can save metadata however they like. However, would it be useful to come up with a standard way of recordi…
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**Describe the bug**
Re-preprocess data in a different folder with newest xcpengine docker image, resulted in multiple errors.
**Cohort file**
Paste cohort file between the triple backticks
```
…