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Hello!
I have installed medaka 1.8.1 using a virtual environment, as well as its dependencies, on an Ubuntu 20.04.4 LTS with no GPU. Then I have run the script below, following the model suggested …
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### Welcome
- [X] Yes, I'm using a binary release within 2 latest major releases. Only such installations are supported.
- [X] Yes, I've searched similar issues on GitHub and didn't find any.
- [X] Y…
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### Welcome
- [X] Yes, I'm using a binary release within 2 latest major releases. Only such installations are supported.
- [X] Yes, I've searched similar issues on GitHub and didn't find any.
- […
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Hi,
I have made a conda install of dragonflye (within a docker image), forcing the dependencies for flye and medaka to be the latest versions:
```
micromamba install -n base -y -c conda-forge -…
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### Use Case
This issue starts discussion about enabling:
- linter: [gosec](https://github.com/securego/gosec) - Inspects source code for security problems by scanning the Go AST.
- rule: [G303 - C…
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Could you please advise on which model should be used for medaka for polishing a long read sequenced genome recovered by using flow cell FLO-MIN114, Guppy version 6.3.8, and super accurate basecalli…
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**Describe the bug**
I installed medaka using conda and wanted to use it with the model: r941_min_hac_g324. However, the medaka data path only contains hp_compress_model, medaka_model and r941_flip_m…
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Hi, I am trying to use SAST tools on java projects, including **betterscan-ce**. And I want to find out what concrete rules **better-ce** uses to detect vuls. So is there some documentation about it l…
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I have been installing the most recent version of medaka (v1.7.2) from source (for GPU support) many times in the same container image (`nvidia/cuda:11.2.2-cudnn8-runtime-ubuntu18.04`), but recently t…
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**Information**
- `ratbagd` version (`ratbagd --version`):0.16
- Distribution: Arch Linux
- Kernel version (ex. `uname -srmo`): Linux 6.0.9-zen1-1-zen x86_64 GNU/Linux
Device info (if applicab…