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nanoporetech
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medaka
Sequence correction provided by ONT Research
https://nanoporetech.com
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Distribution for v1.12.0 on Bioconda please!
#513
ZarulHanifah
closed
2 days ago
1
installing medaka (with pip) on M1
#512
stephrom
opened
2 weeks ago
1
missing the bam file when running medaka_consensus
#511
hungweichen0327
closed
2 weeks ago
1
Suggestions of threshold of minimum mapping quality and read quality score
#510
hungweichen0327
closed
2 weeks ago
2
Use what kinds of reads for medaka consensus?
#509
hungweichen0327
closed
2 weeks ago
4
error of -d must be specified.
#508
ramnageena11
closed
1 day ago
2
failed to predict model
#507
lucyintheskyzzz
closed
1 month ago
6
[Question] Seeking Guidance on Selecting Appropriate Model for ONT Sequencing
#506
llk578496
closed
1 month ago
2
Failed to run medaka consensus
#505
Sabarish2001
closed
1 month ago
4
Medaka v1.11.3 ImportError - undefined symbol: libdeflate_free_compressor
#504
nbel15
closed
1 month ago
2
Medaka consensus error when stitching consensus chunks together
#503
mgils4
closed
1 month ago
7
Need help with 'AVX instructions not available' error
#502
benn888
closed
1 month ago
2
ModelStoreTF exception <class 'tensorflow.python.framework.errors_impl.InternalError'>
#501
jiehua1995
closed
3 months ago
1
batch size and GPU use
#500
CorentinEscobar
closed
3 months ago
4
Python 3.12 compatibility for pip
#499
mesti90
opened
3 months ago
1
help please with minimap2, tabix, bgzip and bcftools binary files
#498
davidmadariaga
closed
3 months ago
0
Unable to install medaka on Mac M3
#497
sandeepkasaragod
closed
3 months ago
9
Is it possible to use medaka in offline mode?
#496
malvaradol
closed
1 month ago
11
I run medaka consensus in HPC, it only generated HDF5 data, how to generate consensus. fasta?
#495
JWang52md
closed
3 months ago
6
Medaka Compatibility with Fungal Reads
#494
SueFletcher
closed
3 months ago
6
1.6.0 release unavailable in pypi
#493
lvreynoso
closed
4 months ago
2
Makefile:158: recipe for target 'check_lfs' failed make: *** [check_lfs] Error 1
#492
davidmadariaga
closed
4 months ago
2
Empty vcfs when running medaka_haploid_variant command
#491
wojciech-galan
closed
4 months ago
2
Unable to run medaka_consensus on Mac M3
#490
sandeepkasaragod
closed
4 months ago
5
Duplicate entries in annotated VCF file
#489
tfwulff
closed
1 month ago
2
medaka error pyabpoa and libgsl.so.25
#488
CorentinEscobar
closed
4 months ago
1
Medaka error
#487
setshabaTaukobong
closed
1 day ago
1
medaka_consensus run without pyabpoa
#486
greenprotist
closed
3 months ago
1
Bad heap free list error in medaka stitch
#485
SergeWielhouwer
closed
6 months ago
2
process pool error in medaka tandem
#484
zhengxinchang
closed
4 months ago
10
Missing pyabpoa in Docker image
#483
zhengxinchang
closed
3 months ago
3
medaka 1.11.3 quits early
#482
erinyoung
closed
3 months ago
4
Medaka_consensus python command not found error message
#481
LEGMCGILL
closed
3 months ago
4
Medaka_consensus python command not found error message
#480
LEGMCGILL
closed
6 months ago
1
biocontainers issue with 1.11.2 and above
#479
JWDebler
closed
6 months ago
5
Medaka_consensus
#478
LEGMCGILL
closed
6 months ago
1
medaka stitch throws an error about `label_scheme`
#477
jd3234
closed
6 months ago
2
medaka running but not improving assembly
#476
imogen-foote
closed
6 months ago
3
medaka tools resolve_model --auto_model not able to get correct model
#475
replikation
closed
6 months ago
3
dorado model dna_r9.4.1_e8_sup@v3.6 support?
#474
ChristopherBurgess-USDA
closed
6 months ago
6
Failed to stitch consensus chunks. (KeyError: b'contig_1')
#473
DaHye0205
closed
7 months ago
3
Could not load symbol cublasGetSmCountTarget from libcublas.so.11.
#472
aksti
closed
6 months ago
3
Should the sum of SR be equal to DP?
#471
kevin-wamae
closed
7 months ago
1
Medaka variant tools not producing DP and AD fields in VCF FORMAT output
#470
kevin-wamae
closed
7 months ago
1
small edit required in warning message about multithreading
#469
splaisan
closed
7 months ago
0
samtools deps missing when installing with conda
#468
splaisan
closed
7 months ago
0
Medaka_consensus: Could not retrieve index file for 'calls_to_draft.bam'
#467
wn835166087
closed
6 months ago
2
Sum of SR is higher than DP for medaka_haploid_variant output file
#466
mbdabrowska1
closed
7 months ago
3
tools resolve_model requires chardet
#465
Ge0rges
closed
8 months ago
1
medaka_consensus outputs .fasta with option -q
#464
pecholleyn
closed
8 months ago
2
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