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nanoporetech
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medaka
Sequence correction provided by ONT Research
https://nanoporetech.com
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How does medaka handle duplex reads/quality scores?
#463
shenker
closed
8 months ago
1
how to add Base Quality (BQ) tags to vcf output in medaka_haploid_variant
#462
avilella
closed
8 months ago
5
add GHA for multiple versions of python and tensorflow using Medaka test suite
#461
rpetit3
closed
8 months ago
1
The medaka was installed successfully. But when I typed "conda activate medaka''. It indicates that: EnvironmentNameNotFound: Could not find conda environment: medaka. How to fix this?
#460
ht0572
closed
9 months ago
1
Error/warning message when running v1.9.0 docker
#459
yzhang-github-pub
closed
9 months ago
1
Failed to run medaka consensus
#458
Ghanizadeh1980
closed
8 months ago
3
Trying to install medaka on macOS with pip.
#457
cjw85
closed
9 months ago
2
illegal hardware instruction
#456
CFB2018
closed
8 months ago
14
Please push new releases to Conda
#455
Ge0rges
closed
9 months ago
2
choosinge the correct medaka model
#454
laura-bankers
closed
10 months ago
1
How trustworthy is the quality score output of medaka smolecule using the --quality flag?
#453
AmstlerStephan
closed
10 months ago
1
Medaka running slow - only uses 1% of CPU
#452
SidselC
closed
10 months ago
0
Cannot import pyabpoa, some features may not be available. medaka 1.9.0
#451
nextgenusfs
closed
10 months ago
1
Medaka installation problems and a question about models
#450
mprous1
closed
10 months ago
2
Output .fasta is missing several contigs
#449
katholan
closed
10 months ago
1
medaka_consensus Model for Guppy 6.4.6
#448
FrostFlow13
closed
11 months ago
2
Error running medaka_consensus: cannot import name 'dtensor' from 'tensorflow.compat.v2.experimental'
#447
alexanderwg-ornl
closed
9 months ago
2
[E::fai_retrieve] Failed to retrieve block: unexpected end of file
#446
JasonNPitt
closed
10 months ago
2
Error running medaka_consensus
#445
RayanaFeltrin
closed
11 months ago
2
line 16: 95164 Illegal instruction
#444
KylonisThanos
closed
9 months ago
4
OSError: [Errno 39] Directory not empty: 'variables'. Medaka fails at medaka consensus
#443
imdanique
closed
8 months ago
7
model for Guppy 6.4.2
#442
ArtyomVodnev
closed
11 months ago
3
Get models for Medaka with no access to internet?
#441
blediro
closed
10 months ago
1
Relaxation of dependency on fixed version of TensorFlow?
#440
tardigradus
closed
1 year ago
2
Bcftools not found when running Medaka regardless of versions
#439
quocviet0908
closed
1 year ago
2
medaka_haploid_variant model for guppy v 6.4.8
#438
katefgit
closed
8 months ago
9
offline usage
#437
nick297
closed
1 year ago
4
5KHz basecalling model compatibility
#436
mcrone
closed
1 year ago
1
polish with ONT reads from different model
#435
cjchen5
closed
10 months ago
5
-d must be specified error?
#434
lidi4
closed
10 months ago
1
latest version on conda request 1.7.3
#433
rob123king
closed
1 year ago
1
Correcting data basecalled with Dorado (sup) using Medaka?
#432
tnn111
closed
10 months ago
1
failed call to cuInit: CUDA_ERROR_UNKNOWN: unknown error
#431
XW26
closed
1 year ago
1
failed call to cuInit: CUDA_ERROR_UNKNOWN: unknown error
#430
XW26
closed
1 year ago
3
Failing to clean /tmp when /tmp is mounted from a remote location.
#429
mjpdejong
closed
10 months ago
2
Weird behavior on docker container / medaka_consensus
#428
znruss
closed
10 months ago
6
Polishing a GFA
#427
mmcguffi
opened
1 year ago
2
conda install version error
#426
junkim83
closed
10 months ago
2
OSError: .vcf is unsorted at index
#425
edgraham
closed
10 months ago
1
Questions about consensus polishing models for Version 4 basecallers introduced in medaka v1.7.3
#424
ilnamkang
closed
8 months ago
6
"SyntaxError" reported by medaka_consensus and installing.
#423
jyw-atgithub
closed
10 months ago
2
Request bioconda release of newest version
#422
incoherentian
closed
1 year ago
8
Using cDNA reads to polish exons of a genome
#421
SalvadorGJ
closed
1 year ago
1
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
#420
ZON-ZONG-MIN
closed
1 year ago
3
Auto detecting polishing model based on fastq header information
#419
replikation
closed
8 months ago
2
samtools/minimap2 version conda install
#418
aistBMRG
closed
1 year ago
1
Medaka variant error: OSError: .vcf is unsorted at index #8.
#417
yul96
closed
8 months ago
2
SR and SC info missing in medaka variants output
#416
yul96
closed
1 year ago
2
medaka stitch failed
#415
isnmn
closed
10 months ago
2
Download a model behing a corporative proxy
#414
enekomatute
closed
10 months ago
3
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