issues
search
nanoporetech
/
medaka
Sequence correction provided by ONT Research
https://nanoporetech.com
Other
391
stars
73
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
fix invalid version specifier
#413
KasperSkytte
closed
1 year ago
1
Invalid version specifier in setup.py
#412
KasperSkytte
closed
1 year ago
1
Force medaka to use CPU resources instead of GPU
#411
mmcguffi
closed
1 year ago
4
fix numpy deprecation
#410
cfblaeb
closed
1 year ago
1
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory #408
#409
marianajeeb
closed
1 year ago
5
Can you suggest which model can be used in the existing model list for medaka consensus with flow cell 10.4, Guppy version 6.3.8, and super accurate basecalling? Is it r104_e81_sup_g610?
#408
cjw85
closed
1 year ago
1
model for Guppy 6.3.8
#407
Lobna-H
closed
1 year ago
6
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory #406
#406
marianajeeb
closed
1 year ago
1
Model for Dorado
#405
shaqpl
closed
1 year ago
3
Error numpy has no attribute unicode
#404
ammaraziz
closed
1 year ago
3
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
#403
EllistonV
closed
1 year ago
1
medaka_haploid_variant model selection and quality filter
#402
katefgit
closed
1 year ago
5
medaka_haploid_variant: failed to run medaka consensus
#401
katefgit
closed
1 year ago
4
[medaka_consensus] python: corrupted size vs. prev_size
#400
lxsteiner
closed
1 year ago
3
Question about -g option
#399
hyunjokoo
closed
1 year ago
1
Singularity Error from converted docker container (h5py: OSError: Unable to open file (file signature not found))
#398
jguhlin
closed
1 year ago
4
medaka command and medaka_consensus errors
#397
eprileson
closed
1 year ago
6
Tensorflow and Python version upgrade request: Tensorflow >=2.8.0 for Python 3.10 support
#396
StephDC
closed
1 year ago
2
The DP field is not matching the actual depth when compared with IGV or VAFATOR DP field
#395
Rohit-Satyam
closed
1 year ago
3
Samtools memory error HPC
#394
steinbrl
closed
1 year ago
7
medaka consensus step gets killed everytime
#393
an22an
closed
1 year ago
2
CVE-2007-4559 Patch
#392
TrellixVulnTeam
closed
1 year ago
1
Using mafft instead of muscle for MSA step?
#391
egonozer
closed
1 year ago
3
Medaka freezing
#390
lucyintheskyzzz
closed
1 year ago
7
Which model?
#389
tnn111
closed
1 year ago
5
variant calling for gbk files?
#388
katefgit
closed
1 year ago
1
Anaconda install fails silently
#387
eoli3n
closed
1 year ago
2
260 bps models
#386
Serka-M
closed
1 year ago
0
Medaka fails to complete.
#385
tnn111
closed
1 year ago
3
Medaka variant error: "IndexError: index 0 is out of bounds for axis 0 with size 0"
#384
BioWilko
closed
1 year ago
4
possibility to call mixed bases ?
#383
alantsangmb
closed
1 year ago
1
parameters for minimap2
#382
inemp
closed
1 year ago
1
medaka smolecule concurrent.futures.process.BrokenProcessPool
#381
rob234king
closed
1 year ago
4
Choosing the right model
#380
pbelmann
closed
1 year ago
3
Why does my attempt at retrofitting medaka smolecule to accept BAM input lead to failure in medaka stitch collapse_neighbors
#379
gordonrix
closed
1 year ago
19
test suite generates untracked files
#378
tkonopka
closed
10 months ago
2
convey gaps in consensus sequence via a designated character, e.g. N
#377
tkonopka
closed
1 year ago
1
Preciser description of all terms used to describe medaka models
#376
BCArg
closed
8 months ago
1
CPU usage to high
#375
VadimRakitin
closed
2 years ago
1
R10.4.1 model?
#374
Kirk3gaard
closed
2 years ago
9
medaka versions Mac vs Linux
#373
antoine4ucsd
closed
10 months ago
3
r941_e81 model?
#372
gallardo-seq
closed
2 years ago
4
Cannot find documentation for Medaka
#371
zztin
closed
1 year ago
2
Model for Guppy 6.1.2 super accurate mode
#370
JohnUrban
closed
2 years ago
7
syntax error in medaka_consensus
#369
JDKling
closed
2 years ago
2
RuntimeWarning: divide by zero encountered in log10
#368
wanyuac
closed
10 months ago
4
Segmentation fault
#367
abeliavskaia
closed
2 years ago
1
snakemake: AttributeError: 'DiploidLabelScheme' object has no attribute 'decode_consensus'
#366
jowodo
closed
2 years ago
2
Medaka variant issue
#365
jpn2021
closed
1 year ago
3
Vulnerable shared libraries might make medaka vulnerable. Can you help upgrade to patch versions?
#364
MikeWazoWski123
closed
2 years ago
2
Previous
Next