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We want to separate the schema (which is the purpose of this repo) from mock clients/servers and test code. This issue tracks deleting the no-longer-used infrastructure.
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We currently provide example data and a reference to ease startup. With the addition of sequence annotations API these are some proposed data that the server could ship with. These are public datasets…
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We decided to merge this pull request before shipping to get errors logged in production:
https://github.com/ga4gh/server/pull/1100
But the downside is that it double-logs errors in development.
…
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When attempting to use the client against another GA4GH server it was found that it defaults to send a pageSize of 0. `{u'pageToken': u'', u'pageSize': 0}` are sent with the first request. This bug ca…
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https://ga4gh.github.io/tool-registry-service-schemas/Validator/ looks like at some point it changed to querying HTTPS version of http://142.1.177.188:8080/trs/validator?url=https://staging.dockstore…
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## Problem statement
Service developers may choose to add implementation-specific properties to a GA4GH API. Or they may even choose to add additional endpoints (e.g., for `POST`, `PUT`, `DELETE` o…
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[Notes](https://docs.google.com/document/d/1XsYCMG2JkJen-ZjPAcy7c9RfA41wbzAmXBkB3iQm6PI/edit?usp=sharing) from GA4GH Connect Implementation meeting in Hinxton (April 2019):
> - it’s an array of {, …
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The `frontend.py` could be made more modular by moving the routes to another file as shown [here](https://github.com/david4096/server-1/blob/frontend_refactor/ga4gh/routes.py).
Ideally, the schemas…
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For command as such `
python client_dev.py -vv variants-search http://localhost:8000/v0.5.1 -m1 -c 1000g_2013.HG00096,1000g_2013.HG00096 -V 1000g_2013 -r 1 -e 100000 2>&1 | less
`
should ga4gh server…
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Create appropriate directory
```
$cd /run/shm/1000Genomes/cgd
```
Download CGD reference data
```
$ wget https://github.com/ohsu-computational-biology/ohsu-server-util/raw/master/cgd-08-09-2016.t…