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After import into Cytobank, quad gates from flowjo are not quad gates but instead are 4 rectangular gates. The gates are huge and their edges extend very far off axis. The statistics labels are also v…
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Mike,
I have done some further investigation with respect to the notorious "failed to import" message in Cytobank, that we have been getting more recently when trying to import the GatingML from f…
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Hello,
I have some CyTOF files that I have gated using opencyto, and I'd like to export the GatingSet into cytobank with CytoML but I am encountering this error:
```
> outFile GatingSet2cytob…
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On 01/11/2017 01:23 PM, Florian Klemm wrote:
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> Hi Mike,
>
>
>
> As an afterthought to my previous email, I realized that the data I extract with getData from my gating hierarchy results …
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Looks like the `foci` node in xml workspace is redundant since the coordinates of 4 antipodal points (given by `edge` node) are sufficient for the definition of `EllipsoidGate`.
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Both `GatingSet2flowJo` and `GatingSet2cytobank` generate the `psuedo` gatingML files, which work pretty well for their own purposes.
However the application described in #13 calls for a genuine `gat…
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We may consider exporting `flowJo` workspace instead of standard `gatingML` files due to the lack of support of the latter from `flowJo`.
We've been down that path before, @gfinak , do you recall why …
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We are getting increased requests for this feature, specifically internally from Steve, and externally from at least two other groups.
I think we can justify putting some effort into this.
Phu had e…
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[eval](https://github.com/RGLab/flowCore/blob/trunk/R/eval-methods.R) methods are used to parse the various `transformation` object and convert it to a `Unary function` which can be used for general-p…