RGLab CytoML issues - Githubissues

RGLab / CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing

GNU Affero General Public License v3.0

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issues

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gatingset_to_flowjo hangs

#157 Biomiha closed 3 months ago
1
Support for FCS 3.2?

#156 alefrol638 opened 7 months ago
12
flowjo_to_gatingset ignore range as defined in FCS files

#155 Close-your-eyes opened 8 months ago
3
Incompatible with Apple Silicon Mac

#154 ibgui00 opened 9 months ago
7
boolean gate error

#153 kaitlinchaung opened 1 year ago
0
flowCore::read.FCS works but CytoML::flowjo_to_gatingset fails; no valid FCS file

#152 Close-your-eyes closed 1 year ago
11
flowjo_to_gatingset does not accept data.frame as path

#151 nranthony closed 1 year ago
5
extract inverse transform

#150 Biomiha opened 1 year ago
0
Export populations as dataframe from a FlowJo workspace

#149 rohitfarmer opened 2 years ago
2
flowjo_to_gatingset(), colname not found: error

#148 KammannT opened 2 years ago
2
flowjo_to_gatingset troubleshoot: "unknown tranformation type!transforms:linear"

#147 hughmacmillan opened 2 years ago
3
Using FlowJo gating on pre-compensated, pre-transformed FCS files

#146 timmocking opened 2 years ago
5
gatingset_to_flowjo() fails with unsupported transformation: LIN

#145 kforner opened 2 years ago
0
R Session Aborts when calling flowjo_to_gatingset() more than once

#144 stephenchristy opened 2 years ago
3
fix linear transformation parsing bug

#143 mikejiang closed 2 years ago
1
Ellipses coordinates are not correct in Gating Set after flowJo workspace parsing - v2.9.0

#142 mlamarin closed 2 years ago
4
gs-to-flowjo Singularity issue

#141 ramyar1993 closed 2 years ago
2
Get indices of gated events from a FJ workspace / alternative to flowjo_to_gatingset

#140 Close-your-eyes closed 3 years ago
5
FCS Express compatibility

#139 malcook opened 3 years ago
7
Issue Parsing FlowJo (v10.7.2) XML File

#138 wfulp closed 3 years ago
3
CytoML Xml File Parsing Issues

#137 upatel2 opened 3 years ago
8
try(eval(substitute(subset)), silent = TRUE) in flowjo_to_gatingset causes error when the subset argument is passed by lapply

#136 Close-your-eyes closed 2 years ago
1
gs_cyto_data and gatingset_to_flowjo, or how to update FCS files for flowjo export

#135 baj12 opened 3 years ago
1
gs-to-flowjo parse error

#134 alexheubeck closed 3 years ago
3
gatingset_to_flowjo example not working

#133 baj12 closed 3 years ago
2
Proposed fix for #130

#132 bjreisman closed 3 years ago
1
How to extract the FCS filename from a gatingset

#131 Close-your-eyes closed 3 years ago
1
ce_get_transformations mixes up scales between channels

#130 bjreisman opened 3 years ago
1
Fix broken README link

#129 erictleung closed 3 years ago
0
diva_to_gatingset: option required to *not* use compensation matrix from xml

#128 RPdavies opened 3 years ago
13
FlowJo CurlyQuad gates missing vertices from flowjo_to_gatingset with transform = FALSE

#127 jacobpwagner closed 3 years ago
4
gatingset_to_flowjo gate not found; version problem?

#126 baj12 opened 3 years ago
24
gatingset_to_flowjo: compensated parameter name issue in output workspace prevents ability to edit compensation matrix when data originates from flowjo 9 workspace

#125 bradleyed closed 3 years ago
13
"Not the same x,y dimensions in spillover matrix!" error

#124 timdohm opened 3 years ago
6
How to close a flowjo_workspace ?

#123 kforner closed 3 years ago
2
gatingset_to_flowjo output workspace doesn't include all samples if they have the same $FIL keyword

#122 bradleyed closed 3 years ago
8
2D Box gates treated as Quadrant Gates in .wsp output file

#121 alexheubeck opened 4 years ago
10
Boolean NOT Gate Issue in FlowJo .wsp

#120 alexheubeck opened 4 years ago
10
Warning Message with flowjo_to_gatingset(ws)

#119 EplisonG closed 4 years ago
4
Makefile.in disagrees with DESCRIPTION SystemRequirements

#118 mtmorgan closed 4 years ago
1
How to remove unwanted gates prior to execute in flowjo_to_gatingset

#117 malisas closed 4 years ago
2
Library not installed

#116 kalmSveta opened 4 years ago
13
WSP files not opening properly - Can't find associated FCS files

#115 Sithara85 closed 3 years ago
3
Problems with CytoML package

#114 Chrissi92 closed 4 years ago
1
"No samples in this workspace to parse!" error in flowjo_to_gatingset, apparently bc of divergent sample name and FCS file name

#113 PedroMilanezAlmeida opened 4 years ago
4
After updating to CytoML_2.0.5, error in flowjo_to_gatingset if path is a data.frame

#112 PedroMilanezAlmeida opened 4 years ago
4
flowjo_to_gatingset memory error

#111 SansMorel opened 4 years ago
17
Loss of ability to use gates in imported workspace without transforming the data

#110 PedroMilanezAlmeida closed 4 years ago
7
Error applying xpathApply to FlowJo workspace doc after update to R 4 / Bioc 3.11

#109 PedroMilanezAlmeida closed 4 years ago
3
gatingset_to_flowjo Docker issue

#108 Sithara85 closed 4 years ago
63