RGLab CytoML issues - Githubissues

RGLab / CytoML

A GatingML Interface for Cross Platform Cytometry Data Sharing

GNU Affero General Public License v3.0

28 stars 14 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

gatingset_to_flowjo hangs

#157 Biomiha opened 1 week ago
0
Support for FCS 3.2?

#156 alefrol638 opened 2 months ago
4
flowjo_to_gatingset ignore range as defined in FCS files

#155 Close-your-eyes opened 3 months ago
3
Incompatible with Apple Silicon Mac

#154 ibgui00 opened 4 months ago
7
boolean gate error

#153 kaitlinchaung opened 8 months ago
0
flowCore::read.FCS works but CytoML::flowjo_to_gatingset fails; no valid FCS file

#152 Close-your-eyes closed 1 year ago
11
flowjo_to_gatingset does not accept data.frame as path

#151 nranthony closed 1 year ago
5
extract inverse transform

#150 Biomiha opened 1 year ago
0
Export populations as dataframe from a FlowJo workspace

#149 rohitfarmer opened 1 year ago
2
flowjo_to_gatingset(), colname not found: error

#148 KammannT opened 1 year ago
2
flowjo_to_gatingset troubleshoot: "unknown tranformation type!transforms:linear"

#147 hughmacmillan opened 1 year ago
3
Using FlowJo gating on pre-compensated, pre-transformed FCS files

#146 timmocking opened 1 year ago
5
gatingset_to_flowjo() fails with unsupported transformation: LIN

#145 kforner opened 1 year ago
0
R Session Aborts when calling flowjo_to_gatingset() more than once

#144 stephenchristy opened 1 year ago
3
fix linear transformation parsing bug

#143 mikejiang closed 1 year ago
1
Ellipses coordinates are not correct in Gating Set after flowJo workspace parsing - v2.9.0

#142 mlamarin closed 1 year ago
4
gs-to-flowjo Singularity issue

#141 ramyar1993 closed 2 years ago
2
Get indices of gated events from a FJ workspace / alternative to flowjo_to_gatingset

#140 Close-your-eyes closed 2 years ago
5
FCS Express compatibility

#139 malcook opened 2 years ago
7
Issue Parsing FlowJo (v10.7.2) XML File

#138 wfulp closed 2 years ago
3
CytoML Xml File Parsing Issues

#137 upatel2 opened 2 years ago
8
try(eval(substitute(subset)), silent = TRUE) in flowjo_to_gatingset causes error when the subset argument is passed by lapply

#136 Close-your-eyes closed 2 years ago
1
gs_cyto_data and gatingset_to_flowjo, or how to update FCS files for flowjo export

#135 baj12 opened 3 years ago
1
gs-to-flowjo parse error

#134 alexheubeck closed 3 years ago
3
gatingset_to_flowjo example not working

#133 baj12 closed 3 years ago
2
Proposed fix for #130

#132 bjreisman closed 3 years ago
1
How to extract the FCS filename from a gatingset

#131 Close-your-eyes closed 3 years ago
1
ce_get_transformations mixes up scales between channels

#130 bjreisman opened 3 years ago
1
Fix broken README link

#129 erictleung closed 3 years ago
0
diva_to_gatingset: option required to *not* use compensation matrix from xml

#128 RPdavies opened 3 years ago
13
FlowJo CurlyQuad gates missing vertices from flowjo_to_gatingset with transform = FALSE

#127 jacobpwagner closed 3 years ago
4
gatingset_to_flowjo gate not found; version problem?

#126 baj12 opened 3 years ago
24
gatingset_to_flowjo: compensated parameter name issue in output workspace prevents ability to edit compensation matrix when data originates from flowjo 9 workspace

#125 bradleyed closed 3 years ago
13
"Not the same x,y dimensions in spillover matrix!" error

#124 timdohm opened 3 years ago
6
How to close a flowjo_workspace ?

#123 kforner closed 3 years ago
2
gatingset_to_flowjo output workspace doesn't include all samples if they have the same $FIL keyword

#122 bradleyed closed 3 years ago
8
2D Box gates treated as Quadrant Gates in .wsp output file

#121 alexheubeck opened 3 years ago
10
Boolean NOT Gate Issue in FlowJo .wsp

#120 alexheubeck opened 3 years ago
10
Warning Message with flowjo_to_gatingset(ws)

#119 EplisonG closed 3 years ago
4
Makefile.in disagrees with DESCRIPTION SystemRequirements

#118 mtmorgan closed 3 years ago
1
How to remove unwanted gates prior to execute in flowjo_to_gatingset

#117 malisas closed 3 years ago
2
Library not installed

#116 kalmSveta opened 3 years ago
13
WSP files not opening properly - Can't find associated FCS files

#115 Sithara85 closed 3 years ago
3
Problems with CytoML package

#114 Chrissi92 closed 3 years ago
1
"No samples in this workspace to parse!" error in flowjo_to_gatingset, apparently bc of divergent sample name and FCS file name

#113 PedroMilanezAlmeida opened 3 years ago
4
After updating to CytoML_2.0.5, error in flowjo_to_gatingset if path is a data.frame

#112 PedroMilanezAlmeida opened 3 years ago
4
flowjo_to_gatingset memory error

#111 SansMorel opened 3 years ago
17
Loss of ability to use gates in imported workspace without transforming the data

#110 PedroMilanezAlmeida closed 3 years ago
7
Error applying xpathApply to FlowJo workspace doc after update to R 4 / Bioc 3.11

#109 PedroMilanezAlmeida closed 3 years ago
3
gatingset_to_flowjo Docker issue

#108 Sithara85 closed 3 years ago
63