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Can you provide a list genes used in the reference?
sr320 updated
2 years ago
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
What are the collection types and names? Example:
- Glycine/max/annotations/Lee.gnm3.ann1.ZYY3
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Hello, I am trying to perform gene-based testing on UKB data (following the tutorial found here: https://dnanexus.gitbook.io/uk-biobank-rap/science-corner/using-regenie-to-generate-variant-masks), but…
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Useful to have things like ``gene_name`` and ``gene_position`` in the site metadata.
Using data from here: https://github.com/nextstrain/nextclade_data/blob/release/data/datasets/sars-cov-2/referen…
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Currently the data is text only, needs links to match the format of the current gene summary page.
Example: http://dictybase.org/gene/DDB_G0288511
Every annotation in that panel links to a local…
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We want to be able to include some standard basic statistics on the gene/protein annotation set for an assembly in a genome note. This sub workflow should accept an annotation set and calculate some s…
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I loaded annotables (version 0.2.0) in R and found the coordinates of ensemble annotated genes in grcm38 are acutally the coordinates of ensemble annotated genes based on the updated genome assembly g…
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## Collection types and names:
- Lablab/purpureus/genomes/Highworth.gnm1.8K16
- Lablab/purpureus/annotations/Highworth.gnm1.ann1.HJ3B
- [x] Add collection(s) to the Data Store
- [x] Validate t…
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The September 2024 GO Release ([2024-09-08/](http://release.geneontology.org/2024-09-08/index.html)) is now available.
http://current.geneontology.org/
http://release.geneontology.org/2024-09-08
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We typically have some marker information in the form of an Excel sheet, pandas DataFrame, and eventually a Python dictionary. Using these as gene annotations in various plotting functions (not pl.ran…