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@gwaygenomics made the following observation:
Importing `hetmech.matrix` without previously importing `hetmech.hetmat` gives an `ImportError`
In the following image, I ran the first cell, then r…
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l am running a large computation, which is experiencing a memory leak that appears to be occurring in Pandas version 0.23.4. In total, the computation performs a large number of inner loops (it had pe…
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In https://github.com/greenelab/hetmech/pull/140 / https://github.com/greenelab/hetmech/pull/140/commits/b882476bc4f1807033843e22392dacfdeaaec598, we specified computing degree-grouped permutation sta…
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If we are doing bulk computations of metapaths, we will want to take full advantage of our developing caching functionality. During the computation of most DWPCs, the metapath will be segmented and su…
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Do we want to make `metaedge_to_adjacency_matrix` a method of the `hetio.hetnet.Graph class`? Suggested implementation:
```python
def metaedge_to_adjacency_matrix(self, *args, **kwargs):
…
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When feeding paths into the HetMat archiving functions, it would be very helpful if pathlib paths were supported inputs, as opposed to just strings.
```python
all_paths_1 = hetmat.metagraph.extrac…
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Hi @dhimmel - thanks for putting this repo and analysis together.
I am looking to repurpose [8.gene-set-search.ipynb](https://github.com/greenelab/hetmech/blob/master/8.gene-set-search.ipynb) for a…
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@kkloste brought up that the order chained matrix multiplications are executed affects efficiency: https://github.com/greenelab/hetmech/pull/49#issuecomment-312283251. Turns out there's a [Wikipedia f…
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Hi,
I sent an email to Daniel asking three broad questions about Hetionet that I was interested in for my research. He asked me to post this as a Github issue, so I'm writing them here.
1. Wha…
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We are considering creating another base representation of hetnets. One of the main goals is to facilitate faster network loading, which at present can take over a minute and a half to load a graph.
…