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cosmic has a file called CosmicMutantExport.tsv. it has many columns that not exists in the vcf supplied by cosmic
Gene name Accession Number Gene CDS length HGNC ID Sample name I…
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Dr. Updike mentioned that he would want his physicians to know that they need to look at the guidelines if this result is positive and there is no additional histologic results documented. What we don…
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Hi! Thank you so much for your wonderful package! I am very excited to give it a try. I have previously been able to install it via making a conda environment and doing pip install starfysh, but as no…
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@jo-mueller, the width and height of the saved transformed image (LET) are flipped and do not overlay correctly with the transformed histology image. This problem is not seen when the images are overl…
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Hi author:
I downloaded the ST datasets from the paper 'Berglund, E. et al. Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity. Nat. Commun. 9, 2419 (2…
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Add Animal:
Why do we need URL for performance lab? *specs
Vendor should be 'vendor', not 'Vender'
Add Scan Run:
Performance center should auto-populate from animalID
Can we autopopulate 'Numb…
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After registering a slice to the atlas, how do you move on to the next slice? It's unclear how to do so, repeating previous steps does not work well as it no longer allows me to register new boundarie…
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Hi everyone,
I analyzed Visium spatial transcriptomics data using squidpy.
When using "spatial_scatter", is it possible to not show specific dots with a gene expression leven below a certain t…
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In [`09bb3a0`](https://github.com/Sulstice/Uptime-Medical-Informatics/commit/09bb3a077be2e1d81471d53b87d3bfa43e4df191
), ITK Analysis of Large Histology Datasets (http://www.na-mic.org/Wiki/index.php/…
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Great work, I have run the `run_demo.sh` successfully. But when I want to reproduce some result displayed in the paper, I found the raw histology image used in the demo is not matched in any histology…