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azizilab
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starfysh
Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
BSD 3-Clause "New" or "Revised" License
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Use zero_center = False for sparse matrix?
#60
z-spider
opened
5 days ago
0
Where is code of the section of Downstream analysis like spatial hubs identification?
#59
OMIC-coding
opened
6 days ago
0
Use of Archetypal Analysis for Gene Signatures in Multi Sample Integration
#58
alexprystupa
opened
1 month ago
0
Unable to Install Github Version of Starfysh on to HPC
#57
alexprystupa
opened
1 month ago
4
Question about the calculation of the prior distribution of z
#56
Enderlogic
opened
2 months ago
3
Update README.md
#55
siyuh
closed
3 months ago
0
Update README.md
#54
YinuoJin
closed
3 months ago
0
Update README.md
#53
siyuh
closed
3 months ago
0
add integration&debug utils
#52
siyuh
closed
3 months ago
0
Starfysh version2
#51
siyuh
closed
3 months ago
0
Beta version
#50
YinuoJin
closed
3 months ago
0
Feature request: enhance plot_spatial_gene
#49
Jorges1000
closed
3 months ago
2
POE analysis fails on run_starfysh
#48
Jorges1000
closed
1 month ago
6
Spots without deconvolution output?
#47
kuchikachi
closed
2 months ago
2
Compatibility with Visium HD data?
#46
Rafael-Silva-Oliveira
closed
3 months ago
9
Initializing model parameters...
#45
kuchikachi
closed
5 months ago
1
Potential Bug in `IntegrativeDataset`
#44
psl-schaefer
closed
5 months ago
1
Normalization of Images
#43
psl-schaefer
closed
5 months ago
5
advice for making a custom signature matrix
#42
inofechm
closed
6 months ago
2
Fix: IndentationError: unexpected indent
#41
aadimator
closed
7 months ago
0
Error when using 'utils_integrate.run_starfysh'
#40
yao50985098
closed
6 months ago
1
Update README.md
#39
YinuoJin
closed
7 months ago
0
Beta version
#38
YinuoJin
closed
7 months ago
0
ERROR: Cannot install large-image and large-image[sources]==1.0.0 because these package versions have conflicting dependencies.
#37
ansonkn
closed
7 months ago
2
add tutorial on colab
#36
siyuh
closed
7 months ago
0
A more complete tutorial is needed
#35
Lings01
closed
7 months ago
2
AttributeError: 'VisiumArguments' object has no attribute 'sig_mean_znorm'
#34
DrYzh2024
closed
7 months ago
2
Issue with utils.VisiumArguments
#33
DrYzh2024
closed
7 months ago
1
starfysh/AA.py:230 IndexError: index 1172 is out of bounds for axis 0 with size 1162
#32
Xxianna
closed
7 months ago
1
run_starfysh error with poe argument
#31
Lings01
closed
7 months ago
3
run_starfysh() got an unexpected keyword argument 'patience'
#30
Lings01
closed
7 months ago
1
fix: Multi-dimensional indexing error
#29
aadimator
closed
7 months ago
0
Update README.md
#28
YinuoJin
closed
8 months ago
0
Update README.md
#27
siyuh
closed
8 months ago
0
Update README.md
#26
YinuoJin
closed
10 months ago
0
Update README.md
#25
YinuoJin
closed
12 months ago
0
Xenium data
#24
Bo-UT
closed
12 months ago
1
bug in find_archettypal_spots when major=True
#23
mjhubisz
closed
1 year ago
2
Minor initialization updates
#22
YinuoJin
closed
1 year ago
0
Updated histology integration
#21
YinuoJin
closed
1 year ago
0
Finalize priors & archetype debugging checks
#20
YinuoJin
closed
1 year ago
0
Prior debug
#19
siyuh
closed
1 year ago
1
Poe debug
#18
YinuoJin
closed
1 year ago
0
update starfysh_poe
#17
siyuh
closed
1 year ago
1
setup minor fix
#16
YinuoJin
closed
1 year ago
0
Fixed knn calculation issues
#15
YinuoJin
closed
1 year ago
0
Poe debug
#14
siyuh
closed
1 year ago
0
Can't Access Signature Gene sets
#13
SickMcNugget
closed
1 year ago
1
Updated model
#12
ANazaret
closed
1 year ago
0
Merge pull request #10 from azizilab/main
#11
YinuoJin
closed
1 year ago
0
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