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Currently there are two states for the impute button. 1. Reimpute and 2. reimpute, but no state for the button once the file is in the impute queue and not yet complete. Reflecting that state for the…
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Hello,
I have WGS sequencing data, incuding the bam files and the called SNPs as vcf. I used now stitch to impute my SNPs based on the bam files and the SNP positions. However, I realized since I am …
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Building upon the deliverables outlined in [issue #19](https://github.com/ibis-project/ibisml/issues/19), the objective is to enhance the coverage of ibisml machine learning preprocessing transformati…
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Hello,
I am currently using DEEP-HLA for the first time, and I have encountered an issue when running the impute.py script. Specifically, I am receiving the following error:
Traceback (most rece…
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Hi, could you share files "single_F3_scaler.pkl" and "single_F3_imputer.pkl" ?
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A recipe step that imputes using random values of the non-missing data. The way I see it, it is on the other side of the variance/bias tradeoff compared to `step_impute_mean()`.
Bonus: this would …
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This awesome function takes `nominal` or `numeric` params.
Ordinal type cols fall between `nominal` and `numeric` and it isn't clear to the user which to use (since behavior changes from knn to bag).…
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Hi there,
I was testing the read.my.acc utilization of the GGIR and noticed that there is a discrepancy in the result of the same file if I input it as gt3x or as a customized csv. I am building a cu…
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The Department for Transport has lots of [data](https://www.gov.uk/government/statistical-data-sets/nts03-modal-comparisons#travel-by-car-access-household-income-household-type-ns-sec-and-mobility-sta…
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Hello,
we are trying to optimize our pipeline of phasing and imputation using Eagle and Minimac4 and the 1000 Genomes reference panel and we would like to know your suggestions regarding the best s…