statgen Minimac4 issues

statgen / Minimac4

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issues

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Missing INFO.gz after imputation & Sample ploidy inconsistency error on chrX

#78 yiiruulin opened 1 week ago
1
record mismatch in temp files when -a option is active

#77 edg1983 opened 2 months ago
7
Error: failed loading target haplotypes

#76 TheRainInSpain opened 2 months ago
5
should the reference vcf file be phased

#75 TheRainInSpain closed 2 months ago
1
Inconsistent ploidy and segmentation fault when creating 1000GP chrX.PAR[1-2].msav

#74 youngchanpark opened 3 months ago
1
Error: target chromosome not found in genetic map file

#73 WeiYang-BAI closed 4 months ago
3
Specific information on HDS

#72 bgb-ipl opened 4 months ago
2
Problem with Installing

#71 dat4yc closed 4 months ago
2
Error: failed writing output

#70 andrei-barysenka closed 4 months ago
5
Non-adjacent blocks from --compress-reference

#69 andrew-slater opened 5 months ago
3
Error: I/O failed while merging

#68 lingjoyo opened 7 months ago
8
Map file

#67 shiva-g opened 7 months ago
0
Reference Panel download

#66 Shrishtee-kandoi opened 8 months ago
8
Combined haplotypes can't be loaded

#65 rsteinfe1 opened 11 months ago
3
low overlapping between target panel and reference panel

#64 Zhenghongc closed 1 year ago
4
ERROR: Cannot execute binary file

#63 DavidGO464 opened 1 year ago
3
Multithreading during M3VCF/MSAV Generation?

#62 mragsac opened 1 year ago
3
Different chrX ploidy in --output and --empirical-output

#61 robkar closed 1 year ago
9
The imputed vcf has far more genotypes than the target phased vcf and missed rsID.

#60 huww1998 closed 1 year ago
5
The imputed genotypes is increased compared to the original vcf file

#59 liubh9 opened 1 year ago
2
lack of compliance with VCF v4.3 specification

#58 freeseek closed 1 year ago
1
Segmentation fault, and docs

#57 rlad opened 1 year ago
34
Auto deletion of temp files?

#56 eldronzhou closed 1 year ago
1
Error writing output

#55 aokulabasile closed 1 year ago
17
Help to upgrade test suite from version 4.0.3 to 4.1.1

#54 tillea closed 1 year ago
8
New minimac4 release v4.1.0 produces vcf.gz which can't be read by DosageConvertor

#53 sereeena opened 1 year ago
14
Imputing variants at multi-allelic sites

#52 thheng closed 2 years ago
5
Updated reqirements.txt latest version of zlib

#51 Alloyd21 closed 2 years ago
1
Can't build from requirements.txt, zlib v1.2.11 no longer exists

#50 sereeena closed 2 years ago
3
Invalid VCF for two chromosomes, running Minimac through The Michigan Imputation Server

#49 julien-laval closed 2 years ago
2
bash script to show an example of eagle2 + minimac4 for phasing and imputation?

#48 Shicheng-Guo opened 2 years ago
0
Minimac4: commercial license for pharma company usage?

#47 Shicheng-Guo opened 2 years ago
1
Imputation aborted

#46 albaicans closed 2 years ago
4
Imputation of 23andMe data

#45 Panacotaforcota opened 2 years ago
1
Imputing population heterogeneous datasets

#44 albaicans opened 3 years ago
6
SNP ID format of input files and reference panels for imputation

#43 jerrywzy closed 3 years ago
2
Segmentation fault After 'Imputation successful'

#42 jjfarrell closed 1 year ago
8
install failed

#41 xiaomiyang36 opened 3 years ago
9
Imputation of Structural Variants

#40 jjfarrell closed 3 years ago
8
What is minRatio option?

#39 chulghim opened 3 years ago
1
Calculating imputation accuracy Rsq for variants on chromosome X/23

#38 QinqinHuang opened 3 years ago
0
How does GT output in imputed vcf correspond to DS, HDS and GP? chromosome X imputation Michigan server

#37 tesselgalesloot opened 4 years ago
0
CMake Error occurred at installing minimac4

#36 awakumaya closed 4 years ago
6
Retraining on new data?

#35 daquang opened 4 years ago
0
How to obtain the RS ID from Minimac4 results

#34 xiangboyulan opened 4 years ago
17
Download zlib via https and verify checksum

#33 annawinters closed 4 years ago
0
How does Minimac4 handle large chunks of missing genotype when creating reference panel

#32 JoannaTan opened 4 years ago
4
How should missing genotypes be represented in prephased data?

#31 biona001 closed 4 years ago
4
R2 and ER2 in Minimac4 output

#30 ValRi78 closed 4 years ago
3
Inconsistency between vcf and m3vcf reference panels

#29 eyherabh opened 4 years ago
0