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making this to discuss the issues in the new version of the prompt that was added to the repo.
prompt in discussion: https://github.com/NeoVertex1/SuperPrompt/edit/main/tm_prompt.md
this might h…
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1. The home page of the website it very impactful - the students walking by conveys an important theme of the project. However, it doesn't always load. Sometimes the section to the right of the grey b…
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For lack of a better word; I've noticed during training that the VitGAN tends to get stuck on one, two, or three (i don't see four happen very often/at all) "positional blobs" for lack of better words…
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After review, relabel to 'reviewTwo'. After second review, relabel to 'EditorsComment'.
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I'm trying to make a global profile-profile alignment of two MSAs in FASTA format using hhalign (hhsuite-3.3.0-SSE2-Linux), i.e. preserving the columns within each MSA and aligning pairs of columns to…
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where do I cd when doing:
```
for FILE in *.tar;
do
mkdir ${FILE/.tar/};
cd ${FILE/.tar/};
tar xvf ../$FILE;
cd ..;
done
```
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`augur.io.vcf` includes `write_VCF_translation` which is used by `augur translate`. This functionality is better implemented ([and now tested](https://github.com/neherlab/treetime/pull/263)) in treeti…
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### Author(s) of proposal
Ran Wei
### Name of taxon
Lepisorus
### Rank of taxon
Genus
### Approximate number of species affected
_No response_
### Description of change
Lump…
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Dear Fabien,
I'm using your `run_DDD` script and encounter following error:
`[1] "Linear dependence of extinction rate"
You are optimizing lambda mu K
You are fixing nothing
Optimizing the …
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## Description
The Metrics.Evaluate() function only returns certain metrics without returning any errors. When passing the full metrics dictionary from the docs I only get the following in return:
…