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Hi,
does anyone know, what could be wrong when I receive this error message:
Reading annot matrix from ----/Filtered_baseline.[1-22] ...
Traceback (most recent call last):
File ".../ldsc/lds…
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I need some transferred files to retain their "executable" permission from the source location:
```
$ ls -l GenoPred/pipeline/resources/software/ldsc/
total 164
-rw-rw-r-- 1 3605 Jun 5 09:48 C…
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hello, the website in 08_LDSC for reference resource is not working how to solve this issue?
> 2024-06-24 16:00:50-- https://storage.googleapis.com/broad-alkesgroup-public/LDSCORE/w_hm3.snplist.b…
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Hello, I tried to use the LDSC for Partitioned Heritability from Continuous Annotations, but we got the following error information. Can you help to check what's the reason for this kind of error? Tha…
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Hello, thank you for the nice work. I am trying to run GENESIS on a few GWASs, and I am a bit confused with some of the parameter setting:
1) the input should includes the effective sample size, de…
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I get the following error when I run `./ldsc.py --help`:
```
(ldsc) root@image:/opt/ldsc# ./ldsc.py --help
Traceback (most recent call last):
File "./ldsc.py", line 13, in
import ldscore…
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Hello everyone!
If you have access to these files, could you please share them with me?
https://data.broadinstitute.org/alkesgroup/LDSCORE/1000G_Phase3_plinkfiles.tgz
(1000G_EUR_Phase3_plink)
…
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On the wikipage when running:
wget https://data.broadinstitute.org/alkesgroup/LDSCORE/1kg_eur.tar.bz2
I get a 404 error
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Hi,
Just running your example lines to test the installation. See below:
```
library(HOPS)
data(UKBiobank_ZscoresSubset)
ZscoreMatrixWhitened_UKBB
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How to explain my result: Prop._h2 = 1.0 using my ldscore based on my own annot?
Many thanks.