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The transcriptomics clustering functionality is currently bundled into a single R package called scrattch.hicat. To improve performance, reliability, maintainability and extensibility, we will transl…
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### Description
The Figure seems to be missing in this HTML view for me
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Hi, thank you for your work, which has made our single cell analysis much faster.
However, when the nnz of the matrix exceeds the maximum limit of 32 bits, the preprocessing process needs to be perfo…
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### Describe the issue
I got an empty network when doing the Leiden clustering algorithm as follows:
{"type": "error", "data": "Error executing verb \"cluster_graph\" in create_base_entity_graph: Em…
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Hi
I would love to be able to try out `Symphony` for label-transfer, but with a set of labels defined by an alternative method to `Harmony`. So for example, starting from an `sce` object where the …
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**Overview**
Scikit-learn provides a `kneighbors_graph` feature that performs a `kneighbors` and returns a Sparse CSR matrix. This is being implemented in https://github.com/rapidsai/cuml/pull/2461 b…
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`louvain` and `leiden` have a lot of redundant documentation. After having learned in #557, I could file a PR to deduplicate this. Would it be valid to shuffle the arguments in such a way that the sha…
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Hello,
Hope you're doing well! I'm curious what your thoughts are for dealing with interpreting and visualizing sourmash signatures given some metadata.
My workflow is:
1. compute sourmash sig…
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The maximum cluster size feature is a great feature! Would it be possible to add something for a minimum cluster size constraint? In particular, high resolution clustering often results in singletons,…
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- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
grst updated
6 months ago