bnprks BPCells issues - Githubissues

bnprks / BPCells

Scaling Single Cell Analysis to Millions of Cells

https://bnprks.github.io/BPCells

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issues

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fix setMethod not found when loading

#98 Yunuuuu opened 5 hours ago
1
Latest version break the `as.matrix` operation

#97 Yunuuuu opened 6 hours ago
0
[r] Fix dgCMatrix too large error message

#96 bnprks closed 1 day ago
0
Cannot convert BPcells matrix to dgcMatrix

#95 RookieA1 opened 1 day ago
1
R-4.4.1 install problems in debian 11

#94 inesHellmann closed 6 days ago
2
BPCells to h5ad

#93 Sirin24 opened 2 weeks ago
3
incorporate with batch-effect correction methods

#92 Feilijiang opened 1 month ago
1
How to implement rank function ties.method = "first"

#91 Liripo opened 1 month ago
5
saving a merged BPCells object

#90 Flu09 opened 1 month ago
5
address 0x780e5835e340, cause 'memory not mapped'

#89 Yunuuuu closed 1 month ago
5
BPCells::linear_operator()

#88 brgew closed 1 month ago
4
Error in interactive R session on HPC that does not come up when running in rstudio server on the same HPC setup

#87 JesseRop closed 1 month ago
2
Error of hdf5 when installing on HPC Rstudioserver

#86 yifanfu01 closed 2 months ago
2
Instalation issues.

#85 jmgs7 closed 2 months ago
3
Install was not friendly when HDF5 was not installed via RPM in standard location

#84 kgweiss opened 2 months ago
1
Add IterableMatrix MD5 checksum.

#83 brgew closed 2 months ago
7
BPCells count format

#82 sbt2024 opened 3 months ago
2
[cpp]Force the `X/indptr` to be int64 for `createAnnDataMatrix`

#81 ycli1995 closed 3 months ago
1
write two matrix into same path cause wrong results

#80 Yunuuuu opened 3 months ago
7
Error coercing to `dgCMatrix`

#79 mjz1 opened 3 months ago
2
class S4 is not subsettablle

#78 Flu09 opened 3 months ago
3
respect `matrix_type` when coerced into matrix

#77 Yunuuuu closed 3 months ago
3
Try solving the issue "BPCells to H5AD"

#76 ycli1995 closed 3 months ago
1
Try adding supports for non-integer data for 10x HDF5

#75 ycli1995 closed 3 months ago
6
Try adding supports for non-integer data for 10x HDF5

#74 ycli1995 closed 4 months ago
3
`float` matrix type will cause precision loss for large values

#73 Yunuuuu closed 4 months ago
1
wrong scale results after shifting

#72 Yunuuuu closed 5 months ago
1
`transpose_storage_order` occupy a lot of memory for small data on transposed `TransformScaleShift` object

#71 Yunuuuu closed 5 months ago
1
checking data type before merging different matrices

#70 Yunuuuu closed 5 months ago
3
fix lossing dimnames of `[<-` method

#69 Yunuuuu closed 5 months ago
4
`[<-` method return wrong results for `ConvertMatrixType` object

#68 Yunuuuu closed 5 months ago
1
`[<-` method removing names

#67 Yunuuuu closed 5 months ago
5
inconsistent results between `rank_transform` and `colRanks`

#66 Yunuuuu closed 4 months ago
9
Error when subset RNA assay stored on-disk

#65 nimanouri-nn closed 5 months ago
3
Installed but unable to load

#64 mxyoyeme opened 5 months ago
1
install

#63 kriswangchunyan opened 6 months ago
2
[Bpcells x Seurat]Error with jackstraw when data are loaded with BPCells

#62 audrey-gibert closed 5 months ago
3
Element-wise substract between 2 matrices

#61 buutrg opened 6 months ago
4
matrix verification

#60 brgew opened 7 months ago
2
installation fails due to not finding HDF5, both in Rstudio and R even though terminal h5cc and system("h5cc") calls work

#59 sfplab closed 7 months ago
2
Re-licensing of BPCells

#58 wjgreenleaf closed 7 months ago
0
Issue with BPCells::write_matrix_dir: Column Name Error

#57 lisch7 opened 7 months ago
1
"data layers are not joined. Please run JoinLayers"

#56 alice90alice opened 7 months ago
3
`svds` behaves differently when `storage_order` is "row"

#55 ycli1995 opened 7 months ago
1
RSpectra::eigs()/eigs_sym() compatibility with BPCells

#54 PietroAndrei opened 7 months ago
4
Data load error

#53 abhiachoudhary closed 8 months ago
3
`write_matrix_hdf5` crashes when wrapped in other function

#52 ycli1995 closed 8 months ago
8
Submit to CRAN or CONDA

#51 shahrozeabbas opened 8 months ago
15
Reference mapping

#50 LucaTucciarone opened 8 months ago
1
BPCells to h5AD

#49 jonathan-columbiau closed 8 months ago
11