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I tried to train this model few days. However, the reconstruction results always abnormal. If there is anyone success to train this model, can you tell me some tips for training?
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Hello,
I am new to DEqMS. I am trying to analyze MaxQuant data. I was able to follow the vignettes instructions to process the PXD000279 data. However, when I load my own proteinGroups.txt, I encount…
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### Description of feature
@jpfeuffer and @ypriverol discussed that it would be great to have 2 full datasets, LFQ and TMT for the AWS tests. We need to find from the benchmark datasets we have used …
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how to do label-free quantification and I cannot find the value from pBulid and the result files. I am wondering if the pfind is capable to do LFQ, and if yes, is the "match between runs" applied and…
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@yafeng , @glormph and @husensofteng I am getting the following error. I have followed the instruction on your README and when I run the job it fails. I am working on the with the LFQ raw files.
E…
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How does the degree of elitism relate to other values? I input pop size 1000 and deg of elitism as 100 and got the error :
“**Incorrect moving average (MA) value! Please provide an odd integer (e.…
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### Context
I'm making my first steps with the _LFQ-MBR_ workflow in order to compare its performance with other search soft. Since I like to have Proteins and PSMs information explicitly for each sp…
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### Description of feature
Would be good to test for multiple datasets the impact of the parameter `num_hits`. The idea would be seen how this parameter will affect the identification step and the qu…
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Hey, wanted to start this comm channel as I'm looking to do a large scale training run using some of this code. I'm happy to share graphs/samples as I go along and wanted to ask a few things to start …
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The timetable on the GDoc for this iteration is quite accurate (I adjusted it to match what actually happened, with the help of the recording).
Some ideas compiled here, which we can turn into issu…