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Hello,
I'm exploring the dating option with my data using the input as follows:
\iqtree2.exe -s lemni_realligned_20200602_woalti.phy -p best_scheme_realligned_PF_20200602.txt -t PARS -B 5000 --date…
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𝒮𝓅𝒾𝓇𝒾𝓉 𝒮𝒶𝑔𝑒
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![Stable DDLC ( Preview )](https://user-images.githubusercontent.com/43480604/72648384-8927d280-3940-11ea-859e-d90692980ccd.png)
📁 Nirvana Preview
`Sheet Music C…
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Comment below with questions or thoughts about the reading for [this week's workshop](https://github.com/uchicago-computation-workshop/Fall2019/blob/master/10-31_West&Bergstrom/README.md).
Please m…
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Hi, thanks for the great tool. When I try to use the command below,
'ilp_solver = cas.solver.ILPSolver(convergence_time_limit=500, maximum_potential_graph_layer_size=500, weighted=True, seed=1234)
…
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There seems to be a large artefactual branch on BA.2.86.1 but actually being JN.1/2, when investigated I found it attracts seqs with no coverage around S:20.
@AngieHinrichs @yatisht
[usher](https…
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Hello. Pyjar appears to be causing a core dump. This may be related to this [issue](https://github.com/nickjcroucher/gubbins/issues/366). This was run on the cleaned output of Snippy from 104 _A. baum…
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My project will analyze _Salmonella enterica_ subsp. _enterica_ serovar _Enteritidis_ (_S. enteritidis_) genomes from a variety of international locations. I think the paper given below would be a goo…
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Some comments on the manuscript in `https://github.com/marccanby/linguiphyr/blob/main/paper/paper.md?plain=1`
As a proviso, I'm a proponent of a very different framework (Bayesian approaches) and …
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I was running the modeltest-ng with the concated single copy gene as input, using the following command
```
modeltest-ng -d aa -i all.mafft.aln.trimmed.fa -o all_model -T raxml -p 136
```
However,…