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I was using a Python wrapper script to call one of the in built Galaxy scripts ($GALAXYDIR/scripts/api/library_upload_dir.py) to load/syncronise a number of data folders between our HPC cluster and ou…
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# Strategies for reloading probands as trios
In our MCRI Seqr instance, we have the following scenario.
* Existing project with 102 probands/individuals (i.e. 102 families, each with one individ…
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At MCRI, as part of our recent merge with upstream code, we noticed [new "Privacy Policy" and "Terms of Service" agreements](https://github.com/broadinstitute/seqr/pull/1486) were added for users to a…
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I experienced an issue when updating to PHP8. In some circumstances the JSON file seems to be corrupted. The JSON file looks like
```
REDCap crashed due to an unexpected PHP fatal error!
Error…
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- Repository: https://github.com/Oshlack/AllSorts
- [x ] I understand that by submitting my package to _Bioconductor_,
the package source and all review commentary are visible to the
genera…
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I'm trying to get a report out once a month. The E.M. isn't working yet. I configured it to use "Require module-specific user privileges" in hopes it would work. It threw an error which was emailed…
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Not sure if that's and issue with my dependencies or the luxpy package itself. However, I get above error with version > 1.6 (1.6.0 and 1.6.1) Versions up to 1.5.3 work fine. Installed in Thonny with …
am-ac updated
3 years ago
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**Describe the bug**
Open any project and click "Project Variant Search" then click "Search" (or any filtered Search that returns some results).
Chrome console log shows the following:
```log…
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I recently upgraded my R version and note that complexHeatmap is not available. Are there plans to make it available for v4.01 of R? Thanks
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Hi,
I'm coming across an error. I have to change the sample identifiers for privacy reasons...
My command is:
```
bpipe run STRetch_wgs_pipeline.groovy s1_R1.fastq.gz s1_R2.fastq.gz s2_R1.fast…