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Hi:
When I create my own dataset with node feature of 128 dimension, should I set self.node_types = torch.tensor(128*[1])? If I don't do so, how can I aviod RuntimeError: Expected size for first two …
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Hi @recognizability
Can you tell me what each Node and each Edge of a peptide and MHC is, and what these numbers mean?
Thank you very much.
Mỹ Diễm.
![Screenshot 2024-06-03 at 1 48 59 AM](htt…
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**Description:** Opens the door to leveraging algorithms in the areas of Centrality, Community Detection, Pathfinding, Topological Link Prediction, etc. Bringing to bear advances made in Machine Learn…
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splitting #5 into two tickets.
Come up with categorisation of discriptors.
Come up with a clever way to store these categorisations.
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`Modality` right now only supports a very limited number of cases. It would be helpful to have biomolecules beyond proteins, starting with nucleic acids.
### Describe the solution you'd like
Add…
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**Is your feature request related to a problem? Please describe.**
Currently, MAGIC tends to oversmooth data when using automatic `t` selection and graph fitting parameters.
**Describe the solutio…
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Speculative thread on the possibility to make the graph undirected. It is at all possible?
Some notes and comments on this possibility:
- Edges should become undirected: no more distinction betwee…
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Here is a [Mockup Presentation](https://docs.google.com/presentation/d/1vdwVyMrfj4YdbdJLuzfoTGf3BSWlXlLw4maXR7XtYUU/edit#slide=id.p1) of the workflow
User requirements:
- [ ] creating activity nod…
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This enhancement is requested by BAMT & EPDE users.
Rationale: some domains work a lot with custom constraints on valid solutions. Examples are EPDE and molecular search (drug design). Making them mo…