KrishnaswamyLab MAGIC issues

KrishnaswamyLab / MAGIC

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

GNU General Public License v2.0

332 stars 97 forks source link

issues

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Update LICENSE to Yale Ventures Non-Commercial License

#225 dbhaskar92 opened 3 weeks ago
0
Is it possible to pass a custom embedding?

#224 zvittorio opened 5 months ago
0
Is it a good idea to run magic on sctransform processed data?

#223 iichelhadi opened 6 months ago
0
Rmagic

#222 Chloe-HJL opened 6 months ago
2
Option for Computing KNN with some genes, but returning whole graph

#221 Alistair-Turcan opened 6 months ago
0
Getting 0.0 after imputation

#220 sam-va closed 10 months ago
0
can not put in more than 1 genes.

#219 yaolutian closed 9 months ago
5
Name of the package confused with python-magic package

#218 Rohit-Satyam opened 1 year ago
0
ValueError: Length mismatch: Expected axis has 100 elements, new values have 10782 elements

#217 handesome opened 1 year ago
0
magic() function error: Stuck on "Calculating PCA..."

#216 StefanosVoglis opened 1 year ago
1
Rmagic was removed from the CRAN repository

#215 kuang-da opened 1 year ago
3
Animate MAGIC error

#214 JLTrincado opened 1 year ago
0
problem running magic

#213 AmitElad opened 1 year ago
1
Does it really run in parallel?

#212 LucaTucciarone opened 1 year ago
0
Error: package or namespace load failed for 'Rmagic':

#211 Gabby4548 opened 1 year ago
5
MAGIC on RNA + ATAC data

#210 yamajackr opened 1 year ago
5
NaN values when computing the kernel lead to inability to find t-optimal MATLAB.

#206 ElenaMerinoTejero opened 1 year ago
0
Running UMAP after Magic - is it valid?

#205 Natacoman opened 1 year ago
0
Magic + seurat workflow

#204 anemartinezlarrinaga2898 opened 1 year ago
4
Suggestions for Unable to allocate 276. GiB for an array with shape (161877, 228942) and data type float64

#203 bitcometz opened 2 years ago
0
Magic issue with mkl

#202 abhay0305 opened 2 years ago
0
magic

#201 abhay0305 opened 2 years ago
0
Diffusion operator construction

#200 qubit0 opened 2 years ago
0
MAGIC and batches

#199 AVitriolo opened 2 years ago
0
Error: cause segfault, cause 'invalid permissions'

#198 xxxcha opened 3 years ago
0
Error in py_call_impl(callable, dots$args, dots$keywords) : ValueError: Input contains NaN, infinity or a value too large for dtype('float64').

#197 LJK1991 closed 3 years ago
2
fix deploy script

#196 scottgigante closed 3 years ago
1
MAGIC v3.0

#195 scottgigante closed 3 years ago
0
magic_op.set_params(knn=5) and showed: AttributeError: 'MAGIC' object has no attribute 'a'

#194 Roger-GOAT closed 3 years ago
1
Using MAGIC with a combined dataset

#193 saeedfc opened 3 years ago
1
Use MAGIC on SEURAT data

#192 millersan opened 3 years ago
0
MAGIC v2.0.4

#191 scottgigante closed 3 years ago
0
SparseDataFrame is obsolete

#190 gokceneraslan closed 3 years ago
1
Two runs by MAGIC

#189 GeniusYx opened 3 years ago
1
Error in py_module_import when Seurat is loaded before Rmagic

#188 petrsh opened 4 years ago
1
"Error: package or namespace load failed for 'Rmagic'

#187 tuoliver opened 4 years ago
3
Visualizing MAGIC values on PCA

#186 CYZou opened 4 years ago
2
is here a potential bug?

#185 dustincys closed 4 years ago
4
ligand-receptor pair analysis

#184 yaolutian closed 4 years ago
2
Cannot load package phateR or install it

#183 ShaowenJ closed 4 years ago
3
Which slot is Rmagic pulling from a Seurat object?

#182 dagarfield closed 4 years ago
7
TaskLogger error - Rmagic

#181 tallulandrews closed 4 years ago
3
Cannot run MAGIC on certain types of graphtool graphs

#180 mkuchroo closed 3 years ago
0
Use MAGIC on SEURAT integrated DATA

#179 DomenicoSkyWalker89 closed 4 years ago
6
Update issue templates

#178 scottgigante closed 4 years ago
0
Rmagic v2.0.3

#177 scottgigante closed 4 years ago
0
MAGIC v2.0.3

#176 scottgigante closed 4 years ago
0
MAGIC v2.0.2

#175 scottgigante closed 4 years ago
0
MAGIC v2.0.1

#174 scottgigante closed 4 years ago
0
Update README.md

#173 dburkhardt closed 4 years ago
1