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KrishnaswamyLab / MAGIC

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.
GNU General Public License v2.0
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Option for Computing KNN with some genes, but returning whole graph #221

Open Alistair-Turcan opened 8 months ago

Alistair-Turcan commented 8 months ago

I have a use case for building the KNN from only some genes, but then performing imputation on all of them.

I'd prefer an option where I can specify the genes to impute and the genes for computing the graph separately, if possible. Apologies if this is already an option and I missed it.